(9 nodes) (2012) Structural determinants of the outer shell of beta-carboxysomes in Synechococcus elongatus PCC 7942: roles for CcmK2, K3-K4, CcmO, and CcmL. network (Synechocystis sp. PCC6803)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ccmK2	Carbon dioxide-concentrating mechanism protein CcmK homolog 2; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered. (103 aa)
	ccmN	CcmN protein; ORF_ID:sll1032; hypothetical protein. (241 aa)
	ccmM	Carbon dioxide concentrating mechanism protein; ORF_ID:sll1031. (687 aa)
	ccmL	Carbon dioxide concentrating mechanism protein; ORF_ID:sll1030; To E.coli and S.typhimurium CchB. (100 aa)
	ccmK	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered. (111 aa)
	ccmK-2	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered. (103 aa)
	ccmK-3	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered. (112 aa)
	rbcL	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. (470 aa)
	rbcS	Ribulose bisphosphate carboxylase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family. (113 aa)

Your Current Organism:

Synechocystis sp. PCC6803

NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ccmK	ccmK2	gene:10497631	gene:10497632	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide-concentrating mechanism protein CcmK homolog 2; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	0.722
ccmK	ccmL	gene:10497631	gene:10497630	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide concentrating mechanism protein; ORF_ID:sll1030; To E.coli and S.typhimurium CchB.	0.999
ccmK	ccmM	gene:10497631	gene:10497629	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide concentrating mechanism protein; ORF_ID:sll1031.	0.994
ccmK	ccmN	gene:10497631	gene:10497628	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	CcmN protein; ORF_ID:sll1032; hypothetical protein.	0.964
ccmK	rbcL	gene:10497631	gene:10499687	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	0.828
ccmK	rbcS	gene:10497631	gene:10499689	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Ribulose bisphosphate carboxylase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.	0.798
ccmK-2	ccmK-3	gene:10498310	gene:10498311	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	0.771
ccmK-2	ccmK2	gene:10498310	gene:10497632	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide-concentrating mechanism protein CcmK homolog 2; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	0.505
ccmK-2	ccmL	gene:10498310	gene:10497630	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide concentrating mechanism protein; ORF_ID:sll1030; To E.coli and S.typhimurium CchB.	0.998
ccmK-2	ccmM	gene:10498310	gene:10497629	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide concentrating mechanism protein; ORF_ID:sll1031.	0.981
ccmK-2	ccmN	gene:10498310	gene:10497628	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	CcmN protein; ORF_ID:sll1032; hypothetical protein.	0.938
ccmK-2	rbcL	gene:10498310	gene:10499687	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	0.845
ccmK-2	rbcS	gene:10498310	gene:10499689	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Ribulose bisphosphate carboxylase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.	0.840
ccmK-3	ccmK-2	gene:10498311	gene:10498310	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	0.771
ccmK-3	ccmK2	gene:10498311	gene:10497632	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide-concentrating mechanism protein CcmK homolog 2; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	0.488
ccmK-3	ccmL	gene:10498311	gene:10497630	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide concentrating mechanism protein; ORF_ID:sll1030; To E.coli and S.typhimurium CchB.	0.998
ccmK-3	ccmM	gene:10498311	gene:10497629	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Carbon dioxide concentrating mechanism protein; ORF_ID:sll1031.	0.967
ccmK-3	ccmN	gene:10498311	gene:10497628	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	CcmN protein; ORF_ID:sll1032; hypothetical protein.	0.900
ccmK-3	rbcL	gene:10498311	gene:10499687	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.	0.806
ccmK-3	rbcS	gene:10498311	gene:10499689	Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.	Ribulose bisphosphate carboxylase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.	0.833

page 1 of 4

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About