(5 nodes) Amino acid ABC transporter, permease protein, 3-TM domain, and Ligand-gated channel activity network (Pararhodospirillum photometricum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCG08614.1	Lysine-arginine-ornithine-binding periplasmic protein. (303 aa)
	CCG08615.1	Lysine-arginine-ornithine-binding periplasmic protein. (349 aa)
	CCG08618.1	Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine. (246 aa)
	CCG08619.1	Amino acid ABC transporter, permease protein. (268 aa)
	CCG08620.1	ABC transporter component. (278 aa)

Your Current Organism:

Pararhodospirillum photometricum

NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCG08614.1	CCG08615.1	RSPPHO_01988	RSPPHO_01989	Lysine-arginine-ornithine-binding periplasmic protein.	Lysine-arginine-ornithine-binding periplasmic protein.	0.777
CCG08614.1	CCG08618.1	RSPPHO_01988	RSPPHO_01992	Lysine-arginine-ornithine-binding periplasmic protein.	Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine.	0.982
CCG08614.1	CCG08619.1	RSPPHO_01988	RSPPHO_01993	Lysine-arginine-ornithine-binding periplasmic protein.	Amino acid ABC transporter, permease protein.	0.981
CCG08614.1	CCG08620.1	RSPPHO_01988	RSPPHO_01994	Lysine-arginine-ornithine-binding periplasmic protein.	ABC transporter component.	0.969
CCG08615.1	CCG08614.1	RSPPHO_01989	RSPPHO_01988	Lysine-arginine-ornithine-binding periplasmic protein.	Lysine-arginine-ornithine-binding periplasmic protein.	0.777
CCG08615.1	CCG08618.1	RSPPHO_01989	RSPPHO_01992	Lysine-arginine-ornithine-binding periplasmic protein.	Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine.	0.976
CCG08615.1	CCG08619.1	RSPPHO_01989	RSPPHO_01993	Lysine-arginine-ornithine-binding periplasmic protein.	Amino acid ABC transporter, permease protein.	0.976
CCG08615.1	CCG08620.1	RSPPHO_01989	RSPPHO_01994	Lysine-arginine-ornithine-binding periplasmic protein.	ABC transporter component.	0.967
CCG08618.1	CCG08614.1	RSPPHO_01992	RSPPHO_01988	Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine.	Lysine-arginine-ornithine-binding periplasmic protein.	0.982
CCG08618.1	CCG08615.1	RSPPHO_01992	RSPPHO_01989	Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine.	Lysine-arginine-ornithine-binding periplasmic protein.	0.976
CCG08618.1	CCG08619.1	RSPPHO_01992	RSPPHO_01993	Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine.	Amino acid ABC transporter, permease protein.	0.996
CCG08618.1	CCG08620.1	RSPPHO_01992	RSPPHO_01994	Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine.	ABC transporter component.	0.998
CCG08619.1	CCG08614.1	RSPPHO_01993	RSPPHO_01988	Amino acid ABC transporter, permease protein.	Lysine-arginine-ornithine-binding periplasmic protein.	0.981
CCG08619.1	CCG08615.1	RSPPHO_01993	RSPPHO_01989	Amino acid ABC transporter, permease protein.	Lysine-arginine-ornithine-binding periplasmic protein.	0.976
CCG08619.1	CCG08618.1	RSPPHO_01993	RSPPHO_01992	Amino acid ABC transporter, permease protein.	Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine.	0.996
CCG08619.1	CCG08620.1	RSPPHO_01993	RSPPHO_01994	Amino acid ABC transporter, permease protein.	ABC transporter component.	0.998
CCG08620.1	CCG08614.1	RSPPHO_01994	RSPPHO_01988	ABC transporter component.	Lysine-arginine-ornithine-binding periplasmic protein.	0.969
CCG08620.1	CCG08615.1	RSPPHO_01994	RSPPHO_01989	ABC transporter component.	Lysine-arginine-ornithine-binding periplasmic protein.	0.967
CCG08620.1	CCG08618.1	RSPPHO_01994	RSPPHO_01992	ABC transporter component.	Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine.	0.998
CCG08620.1	CCG08619.1	RSPPHO_01994	RSPPHO_01993	ABC transporter component.	Amino acid ABC transporter, permease protein.	0.998