(53 nodes) PAS domain network (Pararhodospirillum photometricum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCG08277.1	Sensor protein. (1680 aa)
	CCG08326.1	Sensor protein. (887 aa)
	CCG08362.1	Sensor protein. (1080 aa)
	CCG08446.1	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S). (982 aa)
	CCG08453.1	Sensor protein. (778 aa)
	CCG08584.1	Sensor protein. (370 aa)
	CCG08892.1	Sensor protein. (1034 aa)
	CCG09039.1	Guanylate cyclase (GGDEF domain) with PAS/PAC sensor and Response Regulator Receiver modulation. (427 aa)
	CCG09068.1	Sensor protein. (674 aa)
	CCG09069.1	FOG: PAS/PAC domain. (446 aa)
	CCG09082.1	Methyl-accepting chemotaxis protein, putative. (623 aa)
	CCG09124.1	PAS:GGDEF. (996 aa)
	CCG09132.1	Sensor protein. (738 aa)
	CCG09177.1	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S). (628 aa)
	CCG09277.1	Methyl-accepting chemotaxis protein. (403 aa)
	CCG09358.1	Sensor protein. (621 aa)
	CCG09364.1	Sensor protein. (1388 aa)
	CCG09404.1	Sensor protein. (757 aa)
	CCG09500.1	Sensory box sensor histidine kinase, putative. (808 aa)
	CCG09501.1	Sensor protein. (1019 aa)
	CCG09689.1	Putative uncharacterized protein. (465 aa)
	CCG09846.1	Sensor protein. (767 aa)
	CCG06622.1	Putative uncharacterized protein. (294 aa)
	CCG07491.1	Putative uncharacterized protein. (241 aa)
	CCG07511.1	Sensor protein. (931 aa)
	CCG07587.1	Sensor protein. (725 aa)
	CCG07697.1	Diguanylate cyclase/phosphodiesterase. (685 aa)
	CCG07710.1	Putative diguanylate cyclase (GGDEF domain). (782 aa)
	CCG07830.1	Sensor protein. (657 aa)
	CCG07845.1	Sensor protein. (762 aa)
	CCG07890.1	Sensor protein. (560 aa)
	CCG08005.1	Sensor protein. (829 aa)
	CCG08036.1	Sensor protein. (692 aa)
	CCG08078.1	Sensor protein. (926 aa)
	CCG08079.1	FOG: PAS/PAC domain. (707 aa)
	CCG08115.1	Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. (550 aa)
	CCG08161.1	Sensor protein. (598 aa)
	CCG08172.1	Sensor protein. (1215 aa)
	CCG08293.1	Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. (612 aa)
	CCG06665.1	Sensor protein. (1016 aa)
	CCG06691.1	Putative diguanylate phosphodiesterase (EAL domain). (620 aa)
	CCG06858.1	Hypothetical 918 kDa protein Y4LL. (490 aa)
	CCG06878.1	Transcriptional regulator with PAS/PAC domain. (179 aa)
	CCG07061.1	Sensor protein. (1023 aa)
	CCG07073.1	Sensor protein. (644 aa)
	CCG07192.1	PAS:GGDEF. (649 aa)
	CCG07274.1	PAS:GGDEF. (899 aa)
	CCG07387.1	Sensor protein. (802 aa)
	CCG07424.1	Response regulator containing a CheY-like receiver domain and a GGDEF domain. (331 aa)
	CCG07432.1	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S). (746 aa)
	CCG07445.1	Sensor protein. (873 aa)
	CCG07469.1	Sensor protein. (634 aa)
	CCG07476.1	Sensor protein. (730 aa)

Your Current Organism:

Pararhodospirillum photometricum

NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCG06665.1	CCG06691.1	RSPPHO_00039	RSPPHO_00065	Sensor protein.	Putative diguanylate phosphodiesterase (EAL domain).	0.538
CCG06665.1	CCG06858.1	RSPPHO_00039	RSPPHO_00232	Sensor protein.	Hypothetical 918 kDa protein Y4LL.	0.863
CCG06665.1	CCG06878.1	RSPPHO_00039	RSPPHO_00252	Sensor protein.	Transcriptional regulator with PAS/PAC domain.	0.498
CCG06665.1	CCG07061.1	RSPPHO_00039	RSPPHO_00435	Sensor protein.	Sensor protein.	0.950
CCG06665.1	CCG07073.1	RSPPHO_00039	RSPPHO_00447	Sensor protein.	Sensor protein.	0.956
CCG06665.1	CCG07192.1	RSPPHO_00039	RSPPHO_00566	Sensor protein.	PAS:GGDEF.	0.805
CCG06665.1	CCG07274.1	RSPPHO_00039	RSPPHO_00648	Sensor protein.	PAS:GGDEF.	0.958
CCG06665.1	CCG07387.1	RSPPHO_00039	RSPPHO_00761	Sensor protein.	Sensor protein.	0.941
CCG06665.1	CCG07424.1	RSPPHO_00039	RSPPHO_00798	Sensor protein.	Response regulator containing a CheY-like receiver domain and a GGDEF domain.	0.521
CCG06665.1	CCG07432.1	RSPPHO_00039	RSPPHO_00806	Sensor protein.	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S).	0.801
CCG06665.1	CCG07445.1	RSPPHO_00039	RSPPHO_00819	Sensor protein.	Sensor protein.	0.949
CCG06665.1	CCG07469.1	RSPPHO_00039	RSPPHO_00843	Sensor protein.	Sensor protein.	0.948
CCG06665.1	CCG07476.1	RSPPHO_00039	RSPPHO_00850	Sensor protein.	Sensor protein.	0.799
CCG06665.1	CCG07491.1	RSPPHO_00039	RSPPHO_00865	Sensor protein.	Putative uncharacterized protein.	0.437
CCG06665.1	CCG07511.1	RSPPHO_00039	RSPPHO_00885	Sensor protein.	Sensor protein.	0.623
CCG06665.1	CCG07587.1	RSPPHO_00039	RSPPHO_00961	Sensor protein.	Sensor protein.	0.658
CCG06665.1	CCG07697.1	RSPPHO_00039	RSPPHO_01071	Sensor protein.	Diguanylate cyclase/phosphodiesterase.	0.792
CCG06665.1	CCG07710.1	RSPPHO_00039	RSPPHO_01084	Sensor protein.	Putative diguanylate cyclase (GGDEF domain).	0.911
CCG06665.1	CCG07830.1	RSPPHO_00039	RSPPHO_01204	Sensor protein.	Sensor protein.	0.959
CCG06665.1	CCG07845.1	RSPPHO_00039	RSPPHO_01219	Sensor protein.	Sensor protein.	0.480