Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CCG08140.1 | CCG08266.1 | RSPPHO_01514 | RSPPHO_01640 | ATP-dependent DNA helicase RecQ. | Superfamily II DNA helicase. | 0.928 |
| CCG08140.1 | CCG08840.1 | RSPPHO_01514 | RSPPHO_02214 | ATP-dependent DNA helicase RecQ. | DEAD/DEAH box helicase; Belongs to the DEAD box helicase family. | 0.412 |
| CCG08140.1 | CCG08851.1 | RSPPHO_01514 | RSPPHO_02225 | ATP-dependent DNA helicase RecQ. | Superfamily II DNA and RNA helicase. | 0.421 |
| CCG08140.1 | CCG09085.1 | RSPPHO_01514 | RSPPHO_02459 | ATP-dependent DNA helicase RecQ. | ATP-dependent DNA helicase RecG. | 0.509 |
| CCG08266.1 | CCG08140.1 | RSPPHO_01640 | RSPPHO_01514 | Superfamily II DNA helicase. | ATP-dependent DNA helicase RecQ. | 0.928 |
| CCG08266.1 | CCG09085.1 | RSPPHO_01640 | RSPPHO_02459 | Superfamily II DNA helicase. | ATP-dependent DNA helicase RecG. | 0.509 |
| CCG08840.1 | CCG08140.1 | RSPPHO_02214 | RSPPHO_01514 | DEAD/DEAH box helicase; Belongs to the DEAD box helicase family. | ATP-dependent DNA helicase RecQ. | 0.412 |
| CCG08851.1 | CCG08140.1 | RSPPHO_02225 | RSPPHO_01514 | Superfamily II DNA and RNA helicase. | ATP-dependent DNA helicase RecQ. | 0.421 |
| CCG09085.1 | CCG08140.1 | RSPPHO_02459 | RSPPHO_01514 | ATP-dependent DNA helicase RecG. | ATP-dependent DNA helicase RecQ. | 0.509 |
| CCG09085.1 | CCG08266.1 | RSPPHO_02459 | RSPPHO_01640 | ATP-dependent DNA helicase RecG. | Superfamily II DNA helicase. | 0.509 |
| CCG09085.1 | mfd | RSPPHO_02459 | RSPPHO_02461 | ATP-dependent DNA helicase RecG. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.787 |
| CCG09085.1 | secA | RSPPHO_02459 | RSPPHO_00851 | ATP-dependent DNA helicase RecG. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.477 |
| CCG09085.1 | uvrB | RSPPHO_02459 | RSPPHO_00380 | ATP-dependent DNA helicase RecG. | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | 0.414 |
| mfd | CCG09085.1 | RSPPHO_02461 | RSPPHO_02459 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | ATP-dependent DNA helicase RecG. | 0.787 |
| mfd | uvrB | RSPPHO_02461 | RSPPHO_00380 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | 0.433 |
| secA | CCG09085.1 | RSPPHO_00851 | RSPPHO_02459 | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | ATP-dependent DNA helicase RecG. | 0.477 |
| secA | uvrB | RSPPHO_00851 | RSPPHO_00380 | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | 0.598 |
| uvrB | CCG09085.1 | RSPPHO_00380 | RSPPHO_02459 | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | ATP-dependent DNA helicase RecG. | 0.414 |
| uvrB | mfd | RSPPHO_00380 | RSPPHO_02461 | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.433 |
| uvrB | secA | RSPPHO_00380 | RSPPHO_00851 | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.598 |