(13 nodes) PAS fold-3 network (Pararhodospirillum photometricum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCG08161.1	Sensor protein. (598 aa)
	CCG08172.1	Sensor protein. (1215 aa)
	CCG08362.1	Sensor protein. (1080 aa)
	CCG08446.1	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S). (982 aa)
	CCG08453.1	Sensor protein. (778 aa)
	CCG09082.1	Methyl-accepting chemotaxis protein, putative. (623 aa)
	CCG09132.1	Sensor protein. (738 aa)
	CCG09689.1	Putative uncharacterized protein. (465 aa)
	CCG09277.1	Methyl-accepting chemotaxis protein. (403 aa)
	CCG06665.1	Sensor protein. (1016 aa)
	CCG06878.1	Transcriptional regulator with PAS/PAC domain. (179 aa)
	CCG07445.1	Sensor protein. (873 aa)
	CCG07890.1	Sensor protein. (560 aa)

Your Current Organism:

Pararhodospirillum photometricum

NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCG06665.1	CCG06878.1	RSPPHO_00039	RSPPHO_00252	Sensor protein.	Transcriptional regulator with PAS/PAC domain.	0.498
CCG06665.1	CCG07445.1	RSPPHO_00039	RSPPHO_00819	Sensor protein.	Sensor protein.	0.949
CCG06665.1	CCG07890.1	RSPPHO_00039	RSPPHO_01264	Sensor protein.	Sensor protein.	0.958
CCG06665.1	CCG08161.1	RSPPHO_00039	RSPPHO_01535	Sensor protein.	Sensor protein.	0.959
CCG06665.1	CCG08172.1	RSPPHO_00039	RSPPHO_01546	Sensor protein.	Sensor protein.	0.973
CCG06665.1	CCG08362.1	RSPPHO_00039	RSPPHO_01736	Sensor protein.	Sensor protein.	0.797
CCG06665.1	CCG08446.1	RSPPHO_00039	RSPPHO_01820	Sensor protein.	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S).	0.958
CCG06665.1	CCG08453.1	RSPPHO_00039	RSPPHO_01827	Sensor protein.	Sensor protein.	0.956
CCG06665.1	CCG09132.1	RSPPHO_00039	RSPPHO_02506	Sensor protein.	Sensor protein.	0.974
CCG06665.1	CCG09277.1	RSPPHO_00039	RSPPHO_02651	Sensor protein.	Methyl-accepting chemotaxis protein.	0.498
CCG06665.1	CCG09689.1	RSPPHO_00039	RSPPHO_03063	Sensor protein.	Putative uncharacterized protein.	0.780
CCG06878.1	CCG06665.1	RSPPHO_00252	RSPPHO_00039	Transcriptional regulator with PAS/PAC domain.	Sensor protein.	0.498
CCG06878.1	CCG08172.1	RSPPHO_00252	RSPPHO_01546	Transcriptional regulator with PAS/PAC domain.	Sensor protein.	0.461
CCG06878.1	CCG09082.1	RSPPHO_00252	RSPPHO_02456	Transcriptional regulator with PAS/PAC domain.	Methyl-accepting chemotaxis protein, putative.	0.858
CCG07445.1	CCG06665.1	RSPPHO_00819	RSPPHO_00039	Sensor protein.	Sensor protein.	0.949
CCG07445.1	CCG07890.1	RSPPHO_00819	RSPPHO_01264	Sensor protein.	Sensor protein.	0.607
CCG07445.1	CCG08161.1	RSPPHO_00819	RSPPHO_01535	Sensor protein.	Sensor protein.	0.629
CCG07445.1	CCG08172.1	RSPPHO_00819	RSPPHO_01546	Sensor protein.	Sensor protein.	0.935
CCG07445.1	CCG08362.1	RSPPHO_00819	RSPPHO_01736	Sensor protein.	Sensor protein.	0.597
CCG07445.1	CCG08446.1	RSPPHO_00819	RSPPHO_01820	Sensor protein.	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S).	0.606