(38 nodes) Reverse transcriptase/Diguanylate cyclase domain network (Pararhodospirillum photometricum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCG08293.1	Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. (612 aa)
	CCG06683.1	GGDEF domain. (415 aa)
	CCG06695.1	Response regulator. (340 aa)
	CCG06793.1	C4-dicarboxylate transport sensor protein dctB. (597 aa)
	CCG06843.1	Response regulator. (262 aa)
	CCG06858.1	Hypothetical 918 kDa protein Y4LL. (490 aa)
	CCG06907.1	Diguanylate cyclase/phosphodiesterase. (649 aa)
	CCG07160.1	Putative diguanylate cyclase (GGDEF domain). (555 aa)
	CCG07192.1	PAS:GGDEF. (649 aa)
	CCG07274.1	PAS:GGDEF. (899 aa)
	CCG07424.1	Response regulator containing a CheY-like receiver domain and a GGDEF domain. (331 aa)
	CCG07432.1	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S). (746 aa)
	CCG07438.1	Putative diguanylate cyclase (GGDEF domain). (239 aa)
	CCG07460.1	Predicted signal transduction protein. (597 aa)
	CCG07613.1	Response regulator containing a CheY-like receiver domain and a GGDEF domain. (656 aa)
	CCG07626.1	GGDEF family protein. (269 aa)
	CCG07697.1	Diguanylate cyclase/phosphodiesterase. (685 aa)
	CCG07710.1	Putative diguanylate cyclase (GGDEF domain). (782 aa)
	CCG07934.1	GGDEF domain. (199 aa)
	CCG07958.1	Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. (385 aa)
	CCG08079.1	FOG: PAS/PAC domain. (707 aa)
	CCG08115.1	Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain. (550 aa)
	CCG08145.1	Response regulator. (509 aa)
	dinB	Nucleotidyltransferase/DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (349 aa)
	CCG09799.1	Putative diguanylate cyclase (GGDEF domain). (929 aa)
	CCG08446.1	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S). (982 aa)
	CCG08701.1	Response regulator receiver modulated diguanylate cyclase. (558 aa)
	CCG08783.1	Diguanylate cyclase/phosphodiesterase. (681 aa)
	CCG09039.1	Guanylate cyclase (GGDEF domain) with PAS/PAC sensor and Response Regulator Receiver modulation. (427 aa)
	CCG09069.1	FOG: PAS/PAC domain. (446 aa)
	CCG09124.1	PAS:GGDEF. (996 aa)
	CCG09177.1	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S). (628 aa)
	CCG09363.1	Response regulator. (297 aa)
	CCG09392.1	Diguanylate cyclase/phosphodiesterase. (449 aa)
	CCG09427.1	GGDEF family protein. (59 aa)
	CCG09428.1	Putative uncharacterized protein. (346 aa)
	CCG09511.1	Putative diguanylate cyclase (GGDEF domain). (318 aa)
	CCG09689.1	Putative uncharacterized protein. (465 aa)

Your Current Organism:

Pararhodospirillum photometricum

NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCG06683.1	CCG06858.1	RSPPHO_00057	RSPPHO_00232	GGDEF domain.	Hypothetical 918 kDa protein Y4LL.	0.449
CCG06683.1	CCG06907.1	RSPPHO_00057	RSPPHO_00281	GGDEF domain.	Diguanylate cyclase/phosphodiesterase.	0.630
CCG06683.1	CCG07192.1	RSPPHO_00057	RSPPHO_00566	GGDEF domain.	PAS:GGDEF.	0.436
CCG06683.1	CCG07274.1	RSPPHO_00057	RSPPHO_00648	GGDEF domain.	PAS:GGDEF.	0.624
CCG06683.1	CCG07432.1	RSPPHO_00057	RSPPHO_00806	GGDEF domain.	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S).	0.543
CCG06683.1	CCG07460.1	RSPPHO_00057	RSPPHO_00834	GGDEF domain.	Predicted signal transduction protein.	0.853
CCG06683.1	CCG07697.1	RSPPHO_00057	RSPPHO_01071	GGDEF domain.	Diguanylate cyclase/phosphodiesterase.	0.544
CCG06683.1	CCG07710.1	RSPPHO_00057	RSPPHO_01084	GGDEF domain.	Putative diguanylate cyclase (GGDEF domain).	0.446
CCG06683.1	CCG08079.1	RSPPHO_00057	RSPPHO_01453	GGDEF domain.	FOG: PAS/PAC domain.	0.436
CCG06683.1	CCG08115.1	RSPPHO_00057	RSPPHO_01489	GGDEF domain.	Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain.	0.426
CCG06683.1	CCG08293.1	RSPPHO_00057	RSPPHO_01667	GGDEF domain.	Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain.	0.481
CCG06683.1	CCG08446.1	RSPPHO_00057	RSPPHO_01820	GGDEF domain.	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S).	0.619
CCG06683.1	CCG08701.1	RSPPHO_00057	RSPPHO_02075	GGDEF domain.	Response regulator receiver modulated diguanylate cyclase.	0.414
CCG06683.1	CCG08783.1	RSPPHO_00057	RSPPHO_02157	GGDEF domain.	Diguanylate cyclase/phosphodiesterase.	0.537
CCG06683.1	CCG09039.1	RSPPHO_00057	RSPPHO_02413	GGDEF domain.	Guanylate cyclase (GGDEF domain) with PAS/PAC sensor and Response Regulator Receiver modulation.	0.503
CCG06683.1	CCG09069.1	RSPPHO_00057	RSPPHO_02443	GGDEF domain.	FOG: PAS/PAC domain.	0.461
CCG06683.1	CCG09124.1	RSPPHO_00057	RSPPHO_02498	GGDEF domain.	PAS:GGDEF.	0.556
CCG06683.1	CCG09177.1	RSPPHO_00057	RSPPHO_02551	GGDEF domain.	Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S).	0.543
CCG06683.1	CCG09428.1	RSPPHO_00057	RSPPHO_02802	GGDEF domain.	Putative uncharacterized protein.	0.407
CCG06683.1	CCG09689.1	RSPPHO_00057	RSPPHO_03063	GGDEF domain.	Putative uncharacterized protein.	0.435