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mmgD mmgD cccA cccA yrkO yrkO sdhB sdhB sdhA sdhA sdhC sdhC etfA etfA etfB etfB mdh mdh citC citC citZ citZ pykA pykA pfkA pfkA ythA ythA pgi pgi mrpD mrpD yumB yumB fumC fumC acpD acpD ytnI ytnI eno eno pgm3 pgm3 tpiA tpiA pgk pgk gapA gapA cccB cccB ywrO ywrO ywqN ywqN ywlF ywlF tal tal fbaA fbaA narI narI narH narH narG narG qoxD qoxD qoxC qoxC qoxB qoxB qoxA qoxA cydB cydB cydA cydA fbaB fbaB ahpF ahpF yyaE yyaE ldh ldh ydjH ydjH acoL acoL yhcB yhcB citA citA yhfW yhfW yisS yisS ykgB ykgB ykuN ykuN ykuP ykuP pdhA pdhA pdhB pdhB pdhC pdhC pdhD pdhD ctaC ctaC ctaD ctaD ctaE ctaE ctaF ctaF pyrK pyrK rpe rpe sucC sucC sucD sucD tkt tkt citB citB scoB scoB scoA scoA yngG yngG yoeD yoeD yoaE yoaE yozB yozB yocJ yocJ odhB odhB odhA odhA kamA kamA yodR yodR yodS yodS qcrC qcrC qcrB qcrB qcrA qcrA fer fer ansB3 ansB3 zwf zwf gnd gnd bkdB bkdB lpdA lpdA prpD prpD glcK glcK
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mmgDCitrate synthase 3; Belongs to the citrate synthase family. (365 aa)
cccACytochrome c-550 Cytochrome c A. (120 aa)
yrkOPutative protein yrkO. (405 aa)
sdhBSuccinate dehydrogenase iron-sulfur subunit. (252 aa)
sdhASuccinate dehydrogenase flavoprotein subunit. (586 aa)
sdhCSuccinate dehydrogenase cytochrome b-556 subunit. (202 aa)
etfAElectron transfer flavoprotein subunit alpha Alpha-ETF. (325 aa)
etfBProtein fixA. (287 aa)
mdhMalate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (312 aa)
citCIsocitrate dehydrogenase. (423 aa)
citZCitrate synthase; Belongs to the citrate synthase family. (372 aa)
pykAPyruvate kinase; Belongs to the pyruvate kinase family. (585 aa)
pfkA6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (319 aa)
ythACytochrome bd-I oxidase subunit I. (445 aa)
pgiGlucose-6-phosphate isomerase; Belongs to the GPI family. (450 aa)
mrpDPutative monovalent cation/H+ antiporter subunit D. (493 aa)
yumBNADH dehydrogenase. (406 aa)
fumCFumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (462 aa)
acpDAzoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (211 aa)
ytnIGlutaredoxin and related proteins. (95 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (430 aa)
pgm3Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the BPG-independent phosphoglycerate mutase family. (511 aa)
tpiATriosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (253 aa)
pgkPhosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (394 aa)
gapAGlyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (335 aa)
cccBCytochrome c-551 Cytochrome c551. (113 aa)
ywrOYwrO. (177 aa)
ywqNFMN reductase, NADPH-dependent. (181 aa)
ywlFRibose 5-phosphate isomerase B. (149 aa)
talTransaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (212 aa)
fbaAFructose-bisphosphate aldolase. (285 aa)
narIRespiratory nitrate reductase, gamma subunit. (223 aa)
narHNitrate reductase 1, beta subunit. (487 aa)
narGNitrate reductase 1, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1228 aa)
qoxDQuinol oxidase AA3, subunit IV. (122 aa)
qoxCAA3-600 quinol oxidase subunit III. (204 aa)
qoxBCytochrome aa3 quinol oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (649 aa)
qoxAAA3-600 quinol oxidase subunit II; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water. Subunit II transfers the electrons from a quinol to the binuclear center of the catalytic subunit I. (318 aa)
cydBCydB. (357 aa)
cydACytochrome d ubiquinol oxidase, subunit I. (468 aa)
fbaBFructose-bisphosphate aldolase, putative. (290 aa)
ahpFAlkyl hydroperoxide reductase subunit F. (509 aa)
yyaEMolybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (667 aa)
ldhL-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (317 aa)
ydjHUPF0603 protein. (253 aa)
acoLDihydrolipoamide dehydrogenase. (459 aa)
yhcBTrp repressor binding protein. (177 aa)
citACitrate synthase I; Belongs to the citrate synthase family. (369 aa)
yhfWPutative oxidoreductase ordL. (507 aa)
yisSDehydrogenase. (343 aa)
ykgBYkgB. (349 aa)
ykuNFlavodoxin. (157 aa)
ykuPPutative flavodoxin-2. (151 aa)
pdhAPyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). (371 aa)
pdhBPyruvate dehydrogenase E1 component subunit beta. (325 aa)
pdhCPyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase). (442 aa)
pdhDDihydrolipoamide dehydrogenase. (470 aa)
ctaCCytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (356 aa)
ctaDCytochrome c oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (622 aa)
ctaECytochrome c oxidase subunit III. (207 aa)
ctaFCytochrome caa3 oxidase (subunit IV). (110 aa)
pyrKDihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). (256 aa)
rpeRibulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (216 aa)
sucCsuccinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (385 aa)
sucDsuccinyl-CoA synthetase subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (300 aa)
tktTransketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (667 aa)
citBAconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (875 aa)
scoB3-oxoacid CoA-transferase subunit B. (220 aa)
scoA3-oxoacid CoA-transferase subunit A. (233 aa)
yngGhydroxymethylglutaryl-CoA lyase. (299 aa)
yoeDDNA binding domain, excisionase family. (76 aa)
yoaEYoaE; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (687 aa)
yozBPutative 21,0 kDa protein in ctaF 3'region ORF1. (178 aa)
yocJFMN-dependent NADH-azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (208 aa)
odhBDihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (415 aa)
odhA2-oxoglutarate dehydrogenase E1 component; E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). (944 aa)
kamALysine 2,3-aminomutase. (473 aa)
yodRCoA-transferase, beta subunit. (231 aa)
yodSAcetate CoA-transferase alpha subunit. (229 aa)
qcrCMenaquinol-cytochrome c reductase cytochrome b/c subunit; Component of the menaquinol-cytochrome c reductase complex. (209 aa)
qcrBCytochrome b6. (224 aa)
qcrAMenaquinol-cytochrome c reductase iron-sulfur subunit. (167 aa)
ferNAD(P)H-quinone oxidoreductase subunit I. (82 aa)
ansB3Aspartate ammonia-lyase. (475 aa)
zwfGlucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (489 aa)
gnd6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (469 aa)
bkdBBranched-chain alpha-keto acid dehydrogenase subunit E2. (420 aa)
lpdADihydrolipoamide dehydrogenase. (473 aa)
prpD2-methylcitrate dehydratase. (475 aa)
glcKGlucokinase. (320 aa)
Your Current Organism:
Bacillus velezensis YAUB9601Y2
NCBI taxonomy Id: 1155777
Other names: B. velezensis YAU B9601-Y2, Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2, Bacillus methylotrophicus YAU B9601-Y2, Bacillus velezensis YAU B9601-Y2
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