6 items (Saprolegnia diclina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDRG_14413	Uncharacterized protein; Belongs to the NDK family. (1296 aa)
	SDRG_13623	Uncharacterized protein. (325 aa)
	SDRG_01161	Thioredoxin domain-containing protein. (225 aa)
	SDRG_04358	Peroxiredoxin (Alkyl hydroperoxide reductase subunit C). (269 aa)
	SDRG_00607	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (189 aa)
	SDRG_00606	Peroxiredoxin. (87 aa)

Your Current Organism:

Saprolegnia diclina

NCBI taxonomy Id: 1156394
Other names: S. diclina VS20, Saprolegnia declina VS20, Saprolegnia diclina VS20

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDRG_00606	SDRG_01161	T0SFI7	T0R4B2	Peroxiredoxin.	Thioredoxin domain-containing protein.	0.807
SDRG_00606	SDRG_04358	T0SFI7	T0S7H2	Peroxiredoxin.	Peroxiredoxin (Alkyl hydroperoxide reductase subunit C).	0.802
SDRG_00606	SDRG_13623	T0SFI7	T0Q554	Peroxiredoxin.	Uncharacterized protein.	0.794
SDRG_00606	SDRG_14413	T0SFI7	T0PQP4	Peroxiredoxin.	Uncharacterized protein; Belongs to the NDK family.	0.833
SDRG_00607	SDRG_01161	T0S8W7	T0R4B2	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	Thioredoxin domain-containing protein.	0.807
SDRG_00607	SDRG_04358	T0S8W7	T0S7H2	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	Peroxiredoxin (Alkyl hydroperoxide reductase subunit C).	0.802
SDRG_00607	SDRG_13623	T0S8W7	T0Q554	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	Uncharacterized protein.	0.794
SDRG_00607	SDRG_14413	T0S8W7	T0PQP4	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	Uncharacterized protein; Belongs to the NDK family.	0.833
SDRG_01161	SDRG_00606	T0R4B2	T0SFI7	Thioredoxin domain-containing protein.	Peroxiredoxin.	0.807
SDRG_01161	SDRG_00607	T0R4B2	T0S8W7	Thioredoxin domain-containing protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.807
SDRG_01161	SDRG_04358	T0R4B2	T0S7H2	Thioredoxin domain-containing protein.	Peroxiredoxin (Alkyl hydroperoxide reductase subunit C).	0.575
SDRG_01161	SDRG_13623	T0R4B2	T0Q554	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.773
SDRG_01161	SDRG_14413	T0R4B2	T0PQP4	Thioredoxin domain-containing protein.	Uncharacterized protein; Belongs to the NDK family.	0.881
SDRG_04358	SDRG_00606	T0S7H2	T0SFI7	Peroxiredoxin (Alkyl hydroperoxide reductase subunit C).	Peroxiredoxin.	0.802
SDRG_04358	SDRG_00607	T0S7H2	T0S8W7	Peroxiredoxin (Alkyl hydroperoxide reductase subunit C).	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.802
SDRG_04358	SDRG_01161	T0S7H2	T0R4B2	Peroxiredoxin (Alkyl hydroperoxide reductase subunit C).	Thioredoxin domain-containing protein.	0.575
SDRG_04358	SDRG_13623	T0S7H2	T0Q554	Peroxiredoxin (Alkyl hydroperoxide reductase subunit C).	Uncharacterized protein.	0.807
SDRG_04358	SDRG_14413	T0S7H2	T0PQP4	Peroxiredoxin (Alkyl hydroperoxide reductase subunit C).	Uncharacterized protein; Belongs to the NDK family.	0.890
SDRG_13623	SDRG_00606	T0Q554	T0SFI7	Uncharacterized protein.	Peroxiredoxin.	0.794
SDRG_13623	SDRG_00607	T0Q554	T0S8W7	Uncharacterized protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.794