13 items (Mycobacterium tuberculosis variant caprae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ureA	Urease subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease gamma subunit family. (100 aa)
	ureB	Urease subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease beta subunit family. (104 aa)
	ureC	Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	ureF	Urease accessory protein UreF; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	APU25904.1	Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	APU25905.1	Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	efpA	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	APU26771.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	APU27994.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	mtr	Mycothione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
	nicT	Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family. (372 aa)
	hypB_1	Hydrogenase nickel incorporation protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	hypB_2	Hydrogenase nickel incorporation protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)

Your Current Organism:

Mycobacterium tuberculosis variant caprae

NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APU25904.1	APU25905.1	BBG46_09760	BBG46_09765	Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
APU25904.1	ureA	BBG46_09760	BBG46_09740	Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urease subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease gamma subunit family.	0.985
APU25904.1	ureB	BBG46_09760	BBG46_09745	Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urease subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease beta subunit family.	0.995
APU25904.1	ureC	BBG46_09760	BBG46_09750	Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APU25904.1	ureF	BBG46_09760	BBG46_09755	Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urease accessory protein UreF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APU25905.1	APU25904.1	BBG46_09765	BBG46_09760	Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
APU25905.1	hypB_1	BBG46_09765	BBG46_14900	Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase nickel incorporation protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
APU25905.1	hypB_2	BBG46_09765	BBG46_14905	Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase nickel incorporation protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
APU25905.1	ureA	BBG46_09765	BBG46_09740	Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urease subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease gamma subunit family.	0.965
APU25905.1	ureB	BBG46_09765	BBG46_09745	Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urease subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease beta subunit family.	0.984
APU25905.1	ureC	BBG46_09765	BBG46_09750	Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
APU25905.1	ureF	BBG46_09765	BBG46_09755	Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urease accessory protein UreF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APU26771.1	APU27994.1	BBG46_14870	BBG46_14885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
APU26771.1	efpA	BBG46_14870	BBG46_14845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
APU26771.1	mtr	BBG46_14870	BBG46_14890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mycothione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.681
APU27994.1	APU26771.1	BBG46_14885	BBG46_14870	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
APU27994.1	efpA	BBG46_14885	BBG46_14845	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
APU27994.1	hypB_1	BBG46_14885	BBG46_14900	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase nickel incorporation protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
APU27994.1	hypB_2	BBG46_14885	BBG46_14905	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase nickel incorporation protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
APU27994.1	mtr	BBG46_14885	BBG46_14890	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mycothione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About