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hypB_1 hypB_1 hycE hycE mapA mapA ureA ureA ureC ureC ureF ureF APU25904.1 APU25904.1 APU25905.1 APU25905.1 pknJ pknJ APU26642.1 APU26642.1 hypB_2 hypB_2 map map
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hypB_1Hydrogenase nickel incorporation protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
hycEFormate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)
mapAType I methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (266 aa)
ureAUrease subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease gamma subunit family. (100 aa)
ureCUrease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
ureFUrease accessory protein UreF; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
APU25904.1Urease accessory protein UreG; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
APU25905.1Urease accessory protein UreD; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
pknJSerine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
APU26642.1Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
hypB_2Hydrogenase nickel incorporation protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
mapType I methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. (285 aa)
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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