Your Input: | |
| | recF | DNA replication/repair protein RecF; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa) |
| | trxB | Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa) |
| | relA | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (790 aa) |
| | APU26539.1 | Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa) |
| | APU26524.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa) |
| | APU26523.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa) |
| | bcp | Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa) |
| | sodA | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (207 aa) |
| | tcrX_2 | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa) |
| | glbO | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa) |
| | ligC | ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa) |
| | APU27527.1 | ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (203 aa) |
| | dnaQ | 3'-5' exonuclease of DNA polymerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa) |
| | APU27473.1 | Endonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa) |
| | APU28105.1 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (771 aa) |
| | APU27415.1 | Nucleoid-associated protein Lsr2; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa) |
| | APU27409.1 | Adenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa) |
| | disA_1 | DNA integrity scanning protein DisA; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa) |
| | radA | DNA repair protein RadA; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa) |
| | APU27405.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa) |
| | APU27404.1 | CarD family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa) |
| | groES | Co-chaperone GroES; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. (100 aa) |
| | APU27262.1 | Chaperonin GroL; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa) |
| | APU27247.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa) |
| | APU27242.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa) |
| | APU27241.1 | DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa) |
| | APU27230.1 | Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa) |
| | dnaE2 | Error-prone DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1079 aa) |
| | nei | DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa) |
| | APU27159.1 | Similar to the DNA and RNA helicase superfamily II and eukaryotic DEAD family of helicases; longest known protein in E. coli; Derived by automated computational analysis using gene prediction method: Protein Homology. (1513 aa) |
| | sigF | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa) |
| | yedK | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family. (252 aa) |
| | sigH | RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (255 aa) |
| | APU27075.1 | DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa) |
| | APU27073.1 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1055 aa) |
| | APU28042.1 | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1101 aa) |
| | APU26997.1 | Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa) |
| | mscS | Mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa) |
| | cstA | Carbon starvation protein CstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa) |
| | ligB | ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa) |
| | dinP | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (346 aa) |
| | ligA | DNA ligase (NAD(+)) LigA; Derived by automated computational analysis using gene prediction method: Protein Homology. (691 aa) |
| | APU26892.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa) |
| | mutT1 | NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. (317 aa) |
| | APU26890.1 | RNA degradosome polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (742 aa) |
| | APU26882.1 | uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa) |
| | recG | ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method: Protein Homology. (737 aa) |
| | fpg | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (289 aa) |
| | rnhB | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (264 aa) |
| | APU26812.1 | NADPH-dependent ferric siderophore reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa) |
| | APU27982.1 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa) |
| | recA | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (790 aa) |
| | lexA | Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (236 aa) |
| | APU27980.1 | Fatty acid-binding protein; May play a role in the intracellular transport of hydrophobic ligands. (164 aa) |
| | APU26627.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (188 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa) |
| | mutM | DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPG family. (268 aa) |
| | tig | Trigger factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa) |
| | comEA | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa) |
| | mbtI | Salicylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa) |
| | APU26367.1 | 2,3-dihydroxybenzoate-AMP ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (565 aa) |
| | mbtB_1 | Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1414 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (265 aa) |
| | htpG | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. (647 aa) |
| | APU26264.1 | Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa) |
| | APU26263.1 | Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa) |
| | ahpE | Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa) |
| | APU26201.1 | Hypothetical protein; Contains 3'-5'exonuclease domain; Derived by automated computational analysis using gene prediction method: Protein Homology. (647 aa) |
| | APU26152.1 | Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa) |
| | hspX | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the small heat shock protein (HSP20) family. (144 aa) |
| | mpt64 | Immunogenic protein MPB64; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa) |
| | katG | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity. (740 aa) |
| | APU25927.1 | Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa) |
| | APU25922.1 | Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa) |
| | APU25912.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa) |
| | nudF | ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa) |
| | APU26552.1 | Holliday junction DNA helicase RuvB; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa) |
| | recN | DNA repair protein RecN; Derived by automated computational analysis using gene prediction method: Protein Homology. (587 aa) |
| | mpg | 3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA glycosylase MPG family. (203 aa) |
| | APU27863.1 | Excinuclease ABC subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (972 aa) |
| | APU27862.1 | Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa) |
| | uvrB | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (719 aa) |
| | polA_2 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (904 aa) |
| | bcpB | Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa) |
| | glbN | Hemin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa) |
| | APU25632.1 | DNA polymerase IV; Involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa) |
| | APU25611.1 | GDP-mannose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa) |
| | uvrC | Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa) |
| | APU27833.1 | Binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology. (655 aa) |
| | irtB | Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa) |
| | irtA | Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (859 aa) |
| | dinG | ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (664 aa) |
| | APU25439.1 | DNA-3-methyladenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa) |
| | ogt | Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa) |
| | cysNC | Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (614 aa) |
| | cysD | Sulfate adenylyltransferase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa) |
| | APU25401.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (875 aa) |
| | sbcD | DNA repair exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa) |
| | lprC | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa) |
| | APU27820.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa) |
| | APU27818.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa) |
| | deaD | ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (563 aa) |
| | tagA | 3-methyladenine DNA glycosylase; Constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa) |
| | APU25298.1 | Fe-S cluster assembly protein HesB; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa) |
| | APU25293.1 | NAD-dependent protein deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa) |
| | kdpF | K+-transporting ATPase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology. (30 aa) |
| | APU25177.1 | Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1234 aa) |
| | APU25158.1 | DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa) |
| | uvrD1 | ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (771 aa) |
| | APU27771.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa) |
| | APU25104.1 | ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA and has been shown to have polymerase activity; Derived by automated computational analysis using gene prediction method: Protein Homology. (759 aa) |
| | ku | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (273 aa) |
| | pstS1 | Phosphate ABC transporter substrate-binding protein PstS; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa) |
| | pstS | Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (370 aa) |
| | mshD_1 | Mycothiol synthase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol. (315 aa) |
| | APU24996.1 | Fatty acid-binding protein; May play a role in the intracellular transport of hydrophobic ligands; Belongs to the UPF0678 family. (226 aa) |
| | APU27743.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa) |
| | APU24857.1 | Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa) |
| | recD | Exodeoxyribonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa) |
| | APU24765.1 | YajQ family cyclic di-GMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0234 family. (163 aa) |
| | aceA_1 | Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa) |
| | sodC | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (240 aa) |
| | xthA | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa) |
| | APU24611.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa) |
| | BBG46_02155 | NADH dehydrogenase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa) |
| | APU27702.1 | ATP-dependent chaperone ClpB; Derived by automated computational analysis using gene prediction method: Protein Homology. (848 aa) |
| | grpE | Nucleotide exchange factor GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds [...] (235 aa) |
| | dnaK_2 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (625 aa) |
| | eccA3 | Type VII secretion AAA-ATPase EccA; Derived by automated computational analysis using gene prediction method: Protein Homology. (620 aa) |
| | APU24496.1 | DNA polymerase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa) |
| | hsp | Heat-shock protein Hsp20; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the small heat shock protein (HSP20) family. (159 aa) |
| | pckG | Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family. (606 aa) |
| | APU24381.1 | 3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa) |
| | msrA | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (182 aa) |
| | APU24362.1 | PPOX class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa) |
| | APU24330.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa) |
| | dnaB | Replicative DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (874 aa) |
| | ssb_1 | Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa) |
| | APU24298.1 | Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (823 aa) |
