STRINGSTRING
thiX thiX stoA stoA cutL cutL patB patB trxC trxC trxB trxB metH metH APU26919.1 APU26919.1 BBG46_12020 BBG46_12020 APU27472.1 APU27472.1 APU27563.1 APU27563.1 cysD cysD cysNC cysNC ybbN ybbN ygdK ygdK metE_1 metE_1 csd csd trxA_1 trxA_1 trxB1 trxB1 APU25778.1 APU25778.1 metB metB metS metS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
thiXThiol reductase thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
stoAAlkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
cutLCarbon-monoxide dehydrogenase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (799 aa)
patBAminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
trxCThioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family. (116 aa)
trxBThioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
metHMethionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1192 aa)
APU26919.1Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
BBG46_12020Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
APU27472.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
APU27563.1Cysteine desulfurase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
cysDSulfate adenylyltransferase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
cysNCAdenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (614 aa)
ybbNCo-chaperone YbbN; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
ygdKCysteine desufuration protein SufE; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
metE_15-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (759 aa)
csdCysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (417 aa)
trxA_1Thiol reductase thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
trxB1Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family. (123 aa)
APU25778.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
metBCystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
metSmethionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. (519 aa)
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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