23 items (Mycobacterium tuberculosis variant caprae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

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protein homology

Your Input:
	APU24243.1	CCA tRNA nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	APU27287.1	Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	APU27262.1	Chaperonin GroL; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	APU27110.1	Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	ppk2	Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	rhlE	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (527 aa)
	APU26890.1	RNA degradosome polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (742 aa)
	APU26708.1	Polyribonucleotide nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (752 aa)
	APU26680.1	Ribonuclease J; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	APU26617.1	3'-5' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
	rng	Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (953 aa)
	APU26268.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (581 aa)
	APU26116.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (906 aa)
	rho	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (602 aa)
	deaD	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (563 aa)
	APU25301.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	eno	Phosphopyruvate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	groL2_2	Chaperonin GroL; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	dnaK_2	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (625 aa)
	APU24538.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (620 aa)
	APU27688.1	NYN domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	APU24352.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	APU24255.1	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)

Your Current Organism:

Mycobacterium tuberculosis variant caprae

NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APU24243.1	APU26680.1	BBG46_00060	BBG46_14345	CCA tRNA nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease J; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
APU24243.1	APU26708.1	BBG46_00060	BBG46_14505	CCA tRNA nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyribonucleotide nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
APU24243.1	eno	BBG46_00060	BBG46_05525	CCA tRNA nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopyruvate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
APU24243.1	rng	BBG46_00060	BBG46_12805	CCA tRNA nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
APU24255.1	APU25301.1	BBG46_00125	BBG46_06235	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
APU24255.1	APU26680.1	BBG46_00125	BBG46_14345	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease J; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
APU24255.1	deaD	BBG46_00125	BBG46_06720	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.703
APU24255.1	rho	BBG46_00125	BBG46_06965	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.677
APU24255.1	rng	BBG46_00125	BBG46_12805	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
APU24538.1	APU25301.1	BBG46_01760	BBG46_06235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
APU24538.1	APU27262.1	BBG46_01760	BBG46_17800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chaperonin GroL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
APU24538.1	deaD	BBG46_01760	BBG46_06720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.447
APU24538.1	eno	BBG46_01760	BBG46_05525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopyruvate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
APU24538.1	groL2_2	BBG46_01760	BBG46_02405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chaperonin GroL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
APU24538.1	rhlE	BBG46_01760	BBG46_16745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.447
APU25301.1	APU24255.1	BBG46_06235	BBG46_00125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
APU25301.1	APU24538.1	BBG46_06235	BBG46_01760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
APU25301.1	APU26268.1	BBG46_06235	BBG46_11880	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462
APU25301.1	APU26708.1	BBG46_06235	BBG46_14505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyribonucleotide nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
APU25301.1	APU27287.1	BBG46_06235	BBG46_17965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565

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