(11 nodes) Longevity regulating pathway - multiple species network (Aspergillus glaucus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L9W010	zf-Tim10_DDP domain-containing protein; Belongs to the small Tim family. (90 aa)
	A0A1L9V5K8	Uncharacterized protein. (590 aa)
	A0A1L9VAT4	Uncharacterized protein. (1477 aa)
	A0A1L9VC02	Uncharacterized protein. (305 aa)
	A0A1L9VC24	Uncharacterized protein. (378 aa)
	A0A1L9VDE7	AMPKBI domain-containing protein. (454 aa)
	A0A1L9VIB7	Uncharacterized protein; Belongs to the ClpA/ClpB family. (797 aa)
	A0A1L9VSQ1	Hist_deacetyl domain-containing protein. (726 aa)
	A0A1L9VSU6	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (486 aa)
	A0A1L9VSV2	Isochorismatase domain-containing protein. (225 aa)
	A0A1L9VUY3	Uncharacterized protein; Belongs to the ClpA/ClpB family. (926 aa)

Your Current Organism:

Aspergillus glaucus

NCBI taxonomy Id: 1160497
Other names: A. glaucus CBS 516.65, Aspergillus glaucus CBS 516.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1L9V5K8	A0A1L9VAT4	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A1L9V5K8	A0A1L9VSQ1	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.515
A0A1L9V5K8	A0A1L9VSU6	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.470
A0A1L9VAT4	A0A1L9V5K8	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A1L9VAT4	A0A1L9VSQ1	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.646
A0A1L9VAT4	A0A1L9VSU6	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.646
A0A1L9VC02	A0A1L9VDE7	Uncharacterized protein.	AMPKBI domain-containing protein.	0.977
A0A1L9VC24	A0A1L9VDE7	Uncharacterized protein.	AMPKBI domain-containing protein.	0.977
A0A1L9VDE7	A0A1L9VC02	AMPKBI domain-containing protein.	Uncharacterized protein.	0.977
A0A1L9VDE7	A0A1L9VC24	AMPKBI domain-containing protein.	Uncharacterized protein.	0.977
A0A1L9VIB7	A0A1L9VUY3	Uncharacterized protein; Belongs to the ClpA/ClpB family.	Uncharacterized protein; Belongs to the ClpA/ClpB family.	0.964
A0A1L9VSQ1	A0A1L9V5K8	Hist_deacetyl domain-containing protein.	Uncharacterized protein.	0.515
A0A1L9VSQ1	A0A1L9VAT4	Hist_deacetyl domain-containing protein.	Uncharacterized protein.	0.646
A0A1L9VSQ1	A0A1L9VSU6	Hist_deacetyl domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.519
A0A1L9VSU6	A0A1L9V5K8	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uncharacterized protein.	0.470
A0A1L9VSU6	A0A1L9VAT4	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uncharacterized protein.	0.646
A0A1L9VSU6	A0A1L9VSQ1	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Hist_deacetyl domain-containing protein.	0.519
A0A1L9VSV2	A0A1L9VUY3	Isochorismatase domain-containing protein.	Uncharacterized protein; Belongs to the ClpA/ClpB family.	0.490
A0A1L9VUY3	A0A1L9VIB7	Uncharacterized protein; Belongs to the ClpA/ClpB family.	Uncharacterized protein; Belongs to the ClpA/ClpB family.	0.964
A0A1L9VUY3	A0A1L9VSV2	Uncharacterized protein; Belongs to the ClpA/ClpB family.	Isochorismatase domain-containing protein.	0.490