(16 nodes) Ribonuclease H-like superfamily network (Streptomyces auratus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SU9_02222	COG2183 Transcriptional accessory protein. (811 aa)
	SU9_04151	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. (239 aa)
	SU9_04366	COG0349 Ribonuclease D. (385 aa)
	rnhB	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (233 aa)
	SU9_10379	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains. (631 aa)
	orn	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (202 aa)
	SU9_22125	Phosphoglycerate mutase; COG0328 Ribonuclease HI. (393 aa)
	polA	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (912 aa)
	SU9_24362	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. (337 aa)
	SU9_27879	Transposase. (178 aa)
	SU9_29826	Holliday junction resolvase-like protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (154 aa)
	ruvC	Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (192 aa)
	SU9_30011	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. (241 aa)
	rnhA	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (243 aa)
	SU9_32763	Transposase; COG5659 FOG: Transposase. (1206 aa)
	SU9_32883	Transposase; COG5659 FOG: Transposase. (155 aa)

Your Current Organism:

Streptomyces auratus

NCBI taxonomy Id: 1160718
Other names: S. auratus AGR0001, Streptomyces auratus AGR0001, Streptomyces auratus str. AGR0001, Streptomyces auratus strain AGR0001

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SU9_04151	SU9_04366	SU9_04151	SU9_04366	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	COG0349 Ribonuclease D.	0.484
SU9_04151	SU9_10379	SU9_04151	SU9_10379	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	0.510
SU9_04151	SU9_24362	SU9_04151	SU9_24362	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	0.914
SU9_04151	SU9_30011	SU9_04151	SU9_30011	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	0.905
SU9_04151	orn	SU9_04151	SU9_19595	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.	0.536
SU9_04151	polA	SU9_04151	SU9_23680	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.510
SU9_04366	SU9_04151	SU9_04366	SU9_04151	COG0349 Ribonuclease D.	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	0.484
SU9_04366	SU9_24362	SU9_04366	SU9_24362	COG0349 Ribonuclease D.	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	0.484
SU9_04366	SU9_30011	SU9_04366	SU9_30011	COG0349 Ribonuclease D.	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	0.484
SU9_10379	SU9_04151	SU9_10379	SU9_04151	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	0.510
SU9_10379	SU9_22125	SU9_10379	SU9_22125	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	Phosphoglycerate mutase; COG0328 Ribonuclease HI.	0.866
SU9_10379	SU9_24362	SU9_10379	SU9_24362	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	0.634
SU9_10379	SU9_30011	SU9_10379	SU9_30011	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.	0.510
SU9_10379	SU9_32763	SU9_10379	SU9_32763	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	Transposase; COG5659 FOG: Transposase.	0.995
SU9_10379	polA	SU9_10379	SU9_23680	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.958
SU9_10379	rnhA	SU9_10379	SU9_31963	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.839
SU9_10379	rnhB	SU9_10379	SU9_05481	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.710
SU9_10379	ruvC	SU9_10379	SU9_29926	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.498
SU9_22125	SU9_10379	SU9_22125	SU9_10379	Phosphoglycerate mutase; COG0328 Ribonuclease HI.	COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.	0.866
SU9_22125	polA	SU9_22125	SU9_23680	Phosphoglycerate mutase; COG0328 Ribonuclease HI.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.866