(14 nodes) Geraniol degradation network (Streptomyces auratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SU9_02282	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase. (734 aa)
	SU9_04376	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (408 aa)
	SU9_04381	Fatty acid oxidation complex alpha-subunit; COG1024 Enoyl-CoA hydratase/carnithine racemase. (711 aa)
	SU9_09819	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (266 aa)
	SU9_11113	COG1024 Enoyl-CoA hydratase/carnithine racemase. (256 aa)
	SU9_19635	Pyruvate carboxyltransferase; COG0119 Isopropylmalate/homocitrate/citramalate synthases. (313 aa)
	SU9_22060	Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (397 aa)
	SU9_24307	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
	SU9_24727	Polyketide cyclase/dehydrase. (142 aa)
	SU9_25784	COG1024 Enoyl-CoA hydratase/carnithine racemase. (257 aa)
	SU9_28229	Lipid-transfer protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon. (601 aa)
	SU9_33063	Transposase. (303 aa)
	SU9_28451	COG1024 Enoyl-CoA hydratase/carnithine racemase. (266 aa)
	SU9_01885	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (255 aa)

Your Current Organism:

Streptomyces auratus

NCBI taxonomy Id: 1160718
Other names: S. auratus AGR0001, Streptomyces auratus AGR0001, Streptomyces auratus str. AGR0001, Streptomyces auratus strain AGR0001

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SU9_01885	SU9_02282	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.853
SU9_01885	SU9_04376	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.724
SU9_01885	SU9_04381	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	Fatty acid oxidation complex alpha-subunit; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.527
SU9_01885	SU9_11113	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.846
SU9_01885	SU9_19635	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	Pyruvate carboxyltransferase; COG0119 Isopropylmalate/homocitrate/citramalate synthases.	0.553
SU9_01885	SU9_22060	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.760
SU9_01885	SU9_25784	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.743
SU9_01885	SU9_28229	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	Lipid-transfer protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.	0.770
SU9_02282	SU9_01885	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.853
SU9_02282	SU9_04376	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.999
SU9_02282	SU9_04381	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	Fatty acid oxidation complex alpha-subunit; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.676
SU9_02282	SU9_09819	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.527
SU9_02282	SU9_11113	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.928
SU9_02282	SU9_19635	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	Pyruvate carboxyltransferase; COG0119 Isopropylmalate/homocitrate/citramalate synthases.	0.623
SU9_02282	SU9_22060	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.997
SU9_02282	SU9_24307	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.582
SU9_02282	SU9_24727	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	Polyketide cyclase/dehydrase.	0.581
SU9_02282	SU9_25784	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.920
SU9_02282	SU9_28229	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	Lipid-transfer protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.	0.997
SU9_02282	SU9_28451	NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.844