STRINGSTRING
mutL mutL clpB-2 clpB-2 celA1 celA1 FAES_0466 FAES_0466 FAES_0498 FAES_0498 FAES_1118 FAES_1118 recG recG kdpB kdpB clpB clpB mutS2 mutS2 ruvA ruvA FAES_1873 FAES_1873 FAES_1918 FAES_1918 FAES_1920 FAES_1920 clpX clpX FAES_2104 FAES_2104 dnaB dnaB ychF ychF FAES_2453 FAES_2453 FAES_2539 FAES_2539 FAES_2568 FAES_2568 ftsH ftsH FAES_3320 FAES_3320 FAES_3370 FAES_3370 FAES_3375 FAES_3375 FAES_3516 FAES_3516 FAES_3701 FAES_3701 FAES_3737 FAES_3737 FAES_3745 FAES_3745 FAES_3813 FAES_3813 FAES_3970 FAES_3970 FAES_4005 FAES_4005 FAES_4346 FAES_4346 FAES_4368 FAES_4368 FAES_4517 FAES_4517 FAES_4518 FAES_4518 FAES_4587 FAES_4587 hslU hslU FAES_4799 FAES_4799 FAES_4894 FAES_4894 FAES_5012 FAES_5012 FAES_5171 FAES_5171 uvrB uvrB ruvB ruvB FAES_5381 FAES_5381 lon lon FAES_5471 FAES_5471
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (682 aa)
clpB-2ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (886 aa)
celA1Phage tape measure protein. (1530 aa)
FAES_0466Hypothetical protein. (1108 aa)
FAES_0498Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (963 aa)
FAES_1118ATPase associated with various cellular activities AAA_3. (325 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (774 aa)
kdpBK+-transporting ATPase, B subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. (713 aa)
clpBATP-dependent Clp protease ATP-binding subunit ClpB; Belongs to the ClpA/ClpB family. (855 aa)
mutS2Smr protein/MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (814 aa)
ruvAHolliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (195 aa)
FAES_1873ATP-binding region ATPase domain protein; Molecular chaperone. Has ATPase activity. (614 aa)
FAES_1918Protein ecsC. (284 aa)
FAES_1920Chaperone protein clpB; Belongs to the ClpA/ClpB family. (839 aa)
clpXSigma 54 interacting domain protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (411 aa)
FAES_2104ATPase associated with various cellular activities AAA_5. (547 aa)
dnaBReplicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (892 aa)
ychFGTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa)
FAES_2453FeS assembly SUF system protein. (108 aa)
FAES_2539ATPase AAA-2 domain protein; Belongs to the ClpA/ClpB family. (842 aa)
FAES_2568ATPase, P-type (transporting), HAD superfamily,subfamily IC. (861 aa)
ftsHATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (684 aa)
FAES_3320ATPase. (276 aa)
FAES_3370Hypothetical protein. (369 aa)
FAES_3375Hypothetical protein. (543 aa)
FAES_3516Hypothetical protein. (267 aa)
FAES_3701UvrD/REP helicase. (1151 aa)
FAES_3737ATPase associated with various cellular activities AAA_3. (320 aa)
FAES_3745Hypothetical protein. (427 aa)
FAES_3813Smr protein/MutS2. (331 aa)
FAES_3970Excinuclease ABC, A subunit. (885 aa)
FAES_4005Hypothetical protein. (1691 aa)
FAES_4346NIPSNAP family containing protein. (260 aa)
FAES_4368Hypothetical protein. (350 aa)
FAES_4517Hypothetical protein. (226 aa)
FAES_4518Hypothetical protein; Predicted ATPases. (452 aa)
FAES_4587ATPase associated with various cellular activities AAA_3. (323 aa)
hslUHeat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (471 aa)
FAES_4799ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (369 aa)
FAES_4894ATPase. (312 aa)
FAES_5012Hypothetical protein. (325 aa)
FAES_5171Excinuclease ABC, A subunit. (990 aa)
uvrBExcinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (673 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (342 aa)
FAES_5381ATPase associated with various cellular activities AAA_3. (318 aa)
lonATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (828 aa)
FAES_5471UvrD/REP helicase. (766 aa)
Your Current Organism:
Fibrella aestuarina
NCBI taxonomy Id: 1166018
Other names: F. aestuarina BUZ 2, Fibrella aestuarina BUZ 2, Fibrella aestuarina str. BUZ 2, Fibrella aestuarina strain BUZ 2, Flexibacteraceae bacterium BUZ 2
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