19 items (Penicillium digitatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDIG_82160	Uncharacterized protein. (50 aa)
	PDIG_77820	Tubulin subunit TubB; Belongs to the tubulin family. (175 aa)
	PDIG_73840	Calponin-homology (CH) domain-containing protein. (631 aa)
	PDIG_79010	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (436 aa)
	PDIG_38090	Uncharacterized protein. (242 aa)
	PDIG_84570	Class V myosin (Myo4), putative; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1565 aa)
	PDIG_29060	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (486 aa)
	PDIG_77180	Uncharacterized protein. (284 aa)
	PDIG_30510	Uncharacterized protein. (436 aa)
	PDIG_76030	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (926 aa)
	PDIG_31550	Uncharacterized protein. (473 aa)
	PDIG_65620	Microtubule associated protein EB1, putative. (204 aa)
	PDIG_74800	Spindle pole body component, putative. (908 aa)
	PDIG_58890	Uncharacterized protein. (151 aa)
	PDIG_14590	Noc1p protein, putative. (665 aa)
	PDIG_09390	Uncharacterized protein. (495 aa)
	PDIG_11150	Uncharacterized protein. (232 aa)
	PDIG_33020	Nuclear migration protein (ApsA), putative. (1776 aa)
	PDIG_20490	LysM domain-containing protein. (425 aa)

Your Current Organism:

Penicillium digitatum

NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDIG_09390	PDIG_14590	K9G9J7	K9G7V9	Uncharacterized protein.	Noc1p protein, putative.	0.829
PDIG_09390	PDIG_20490	K9G9J7	K9GTS9	Uncharacterized protein.	LysM domain-containing protein.	0.504
PDIG_09390	PDIG_29060	K9G9J7	K9FZ91	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.400
PDIG_09390	PDIG_33020	K9G9J7	K9GMS7	Uncharacterized protein.	Nuclear migration protein (ApsA), putative.	0.849
PDIG_09390	PDIG_65620	K9G9J7	K9G1E7	Uncharacterized protein.	Microtubule associated protein EB1, putative.	0.922
PDIG_09390	PDIG_74800	K9G9J7	K9G1N5	Uncharacterized protein.	Spindle pole body component, putative.	0.645
PDIG_09390	PDIG_77820	K9G9J7	K9FAJ9	Uncharacterized protein.	Tubulin subunit TubB; Belongs to the tubulin family.	0.400
PDIG_09390	PDIG_79010	K9G9J7	K9FTK1	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.620
PDIG_09390	PDIG_82160	K9G9J7	K9F950	Uncharacterized protein.	Uncharacterized protein.	0.504
PDIG_09390	PDIG_84570	K9G9J7	K9FVT4	Uncharacterized protein.	Class V myosin (Myo4), putative; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.728
PDIG_11150	PDIG_74800	K9GAJ5	K9G1N5	Uncharacterized protein.	Spindle pole body component, putative.	0.541
PDIG_11150	PDIG_79010	K9GAJ5	K9FTK1	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.441
PDIG_11150	PDIG_84570	K9GAJ5	K9FVT4	Uncharacterized protein.	Class V myosin (Myo4), putative; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.423
PDIG_14590	PDIG_09390	K9G7V9	K9G9J7	Noc1p protein, putative.	Uncharacterized protein.	0.829
PDIG_14590	PDIG_29060	K9G7V9	K9FZ91	Noc1p protein, putative.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.763
PDIG_14590	PDIG_33020	K9G7V9	K9GMS7	Noc1p protein, putative.	Nuclear migration protein (ApsA), putative.	0.523
PDIG_14590	PDIG_65620	K9G7V9	K9G1E7	Noc1p protein, putative.	Microtubule associated protein EB1, putative.	0.963
PDIG_14590	PDIG_74800	K9G7V9	K9G1N5	Noc1p protein, putative.	Spindle pole body component, putative.	0.865
PDIG_14590	PDIG_77820	K9G7V9	K9FAJ9	Noc1p protein, putative.	Tubulin subunit TubB; Belongs to the tubulin family.	0.763
PDIG_14590	PDIG_79010	K9G7V9	K9FTK1	Noc1p protein, putative.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.587