(6 nodes) Mixed, incl. Small ribosomal subunit rRNA binding, and Plant-pathogen interaction network (Penicillium digitatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDIG_67580	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (440 aa)
	PDIG_16420	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (107 aa)
	PDIG_67500	37S ribosomal protein Mrp17. (121 aa)
	PDIG_03220	Uncharacterized protein. (113 aa)
	PDIG_33640	Mitochondrial ribosomal protein, putative. (224 aa)
	PDIG_29800	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family. (151 aa)

Your Current Organism:

Penicillium digitatum

NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDIG_03220	PDIG_16420	K9GE72	K9G5B9	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
PDIG_03220	PDIG_29800	K9GE72	K9GP62	Uncharacterized protein.	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family.	0.999
PDIG_03220	PDIG_33640	K9GE72	K9GHX4	Uncharacterized protein.	Mitochondrial ribosomal protein, putative.	0.999
PDIG_03220	PDIG_67500	K9GE72	K9G6S6	Uncharacterized protein.	37S ribosomal protein Mrp17.	0.999
PDIG_03220	PDIG_67580	K9GE72	K9FI48	Uncharacterized protein.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.999
PDIG_16420	PDIG_03220	K9G5B9	K9GE72	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.999
PDIG_16420	PDIG_29800	K9G5B9	K9GP62	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family.	0.999
PDIG_16420	PDIG_33640	K9G5B9	K9GHX4	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein, putative.	0.999
PDIG_16420	PDIG_67500	K9G5B9	K9G6S6	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	37S ribosomal protein Mrp17.	0.999
PDIG_16420	PDIG_67580	K9G5B9	K9FI48	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.999
PDIG_29800	PDIG_03220	K9GP62	K9GE72	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family.	Uncharacterized protein.	0.999
PDIG_29800	PDIG_16420	K9GP62	K9G5B9	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
PDIG_29800	PDIG_33640	K9GP62	K9GHX4	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family.	Mitochondrial ribosomal protein, putative.	0.999
PDIG_29800	PDIG_67500	K9GP62	K9G6S6	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family.	37S ribosomal protein Mrp17.	0.999
PDIG_29800	PDIG_67580	K9GP62	K9FI48	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.999
PDIG_33640	PDIG_03220	K9GHX4	K9GE72	Mitochondrial ribosomal protein, putative.	Uncharacterized protein.	0.999
PDIG_33640	PDIG_16420	K9GHX4	K9G5B9	Mitochondrial ribosomal protein, putative.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
PDIG_33640	PDIG_29800	K9GHX4	K9GP62	Mitochondrial ribosomal protein, putative.	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family.	0.999
PDIG_33640	PDIG_67500	K9GHX4	K9G6S6	Mitochondrial ribosomal protein, putative.	37S ribosomal protein Mrp17.	0.999
PDIG_33640	PDIG_67580	K9GHX4	K9FI48	Mitochondrial ribosomal protein, putative.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.999