76 items (Penicillium digitatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDIG_90220	Exosome complex subunit Rrp46, putative. (249 aa)
	PDIG_86910	Utp12 domain-containing protein. (833 aa)
	PDIG_87160	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (234 aa)
	PDIG_90660	Small nucleolar ribonucleoprotein complex subunit Utp15, putative. (542 aa)
	PDIG_82370	HEAT repeat protein (DRIM), putative. (2618 aa)
	PDIG_84360	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (714 aa)
	PDIG_76060	U3 small nucleolar ribonucleoprotein Lcp5, putative. (379 aa)
	PDIG_71250	rRNA biogenesis protein RRP5, putative. (2158 aa)
	PDIG_69140	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (569 aa)
	PDIG_71670	DEAD/DEAH box helicase, putative. (1852 aa)
	PDIG_61800	Exosome complex component ski6. (508 aa)
	PDIG_59740	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (494 aa)
	PDIG_66360	Casein kinase I, putative; Belongs to the protein kinase superfamily. (369 aa)
	PDIG_66510	Exosome complex exonuclease Rrp40, putative. (272 aa)
	PDIG_66810	Pre-rRNA processing nucleolar protein Sik1, putative. (514 aa)
	PDIG_58710	Pre-rRNA-processing protein pno1. (255 aa)
	PDIG_58550	PINc domain-containing protein. (193 aa)
	PDIG_57320	Fibrillarin, putative. (357 aa)
	PDIG_59670	Small nucleolar ribonucleoprotein complex subunit (SOF1), putative. (447 aa)
	PDIG_89440	Ribosome biogenesis protein Noc4, putative. (549 aa)
	PDIG_58530	SnoRNA binding protein, putative. (1031 aa)
	PDIG_50270	ATP-dependent RNA helicase (Hrh1), putative. (809 aa)
	PDIG_44130	Pre-rRNA processing protein Tsr1, putative. (803 aa)
	PDIG_78090	Imp4 protein, putative. (293 aa)
	PDIG_45670	DEAH-box RNA helicase (Dhr1), putative. (1211 aa)
	PDIG_86220	Small nucleolar ribonucleoprotein complex subunit, putative. (616 aa)
	PDIG_38890	ATP dependent RNA helicase, putative. (1452 aa)
	PDIG_76630	Uncharacterized protein. (364 aa)
	PDIG_86100	Protein bfr2. (525 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1035 aa)
	PDIG_43760	3' exoribonuclease family protein (Rrp42), putative. (384 aa)
	PDIG_40970	Exosome complex exonuclease exoribonuclease (Rrp44), putative; Belongs to the RNR ribonuclease family. (1071 aa)
	PDIG_38460	U3 small nucleolar ribonucleoprotein subunit (Imp3), putative. (188 aa)
	PDIG_37730	Exosome complex endonuclease 2/ribosomal RNA processing protein, putative. (324 aa)
	PDIG_34060	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (436 aa)
	PDIG_71330	3' exoribonuclease family protein. (317 aa)
	PDIG_33200	RNA 3'-terminal phosphate cyclase, putative. (428 aa)
	PDIG_70940	WD repeat protein. (729 aa)
	PDIG_25610	RIO1 family protein kinase, putative. (644 aa)
	PDIG_30280	Nonsense-mediated mRNA decay protein (Nmd5), putative. (1022 aa)
	PDIG_75400	SSU processome component Utp10, putative. (1804 aa)
	PDIG_65370	ATP dependent RNA helicase (Dbp8), putative; Belongs to the DEAD box helicase family. (520 aa)
	PDIG_30840	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	PDIG_27720	3' exoribonuclease family protein. (387 aa)
	PDIG_19960	Exosome-associated family protein. (238 aa)
	PDIG_62020	Small nucleolar ribonucleoprotein complex subunit, putative. (943 aa)
	PDIG_18870	WD repeat protein. (774 aa)
	PDIG_21410	Nucleolar protein nop5. (576 aa)
	PDIG_69760	Ribosome biogenesis protein (Bms1), putative. (1180 aa)
	PDIG_58340	rRNA processing protein Bystin, putative. (493 aa)
	PDIG_18550	Ribosomal small subunit assembly protein, putative. (308 aa)
	PDIG_66950	rRNA processing protein Utp6, putative. (395 aa)
	PDIG_56820	U3 small nucleolar RNA-associated protein Utp11, putative. (307 aa)
	PDIG_17460	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (260 aa)
	PDIG_14570	RNA-3'-phosphate cyclase family protein. (402 aa)
	PDIG_51600	Small nucleolar ribonucleoprotein complex subunit Utp14, putatrive. (957 aa)
	PDIG_58670	Methyltransferase, putative. (280 aa)
	PDIG_06780	ATP dependent RNA helicase (Rok1), putative. (723 aa)
	PDIG_05770	WD_REPEATS_REGION domain-containing protein. (956 aa)
	PDIG_09530	Sec2p domain-containing protein. (284 aa)
	PDIG_54720	Low-temperature viability protein ltv1. (504 aa)
	PDIG_07670	Exosome complex subunit Csl4, putative. (246 aa)
	PDIG_44120	Small nucleolar ribonucleoprotein complex subunit, putative. (531 aa)
	PDIG_54040	WD_REPEATS_REGION domain-containing protein. (921 aa)
	PDIG_01110	Small nucleolar ribonucleoprotein complex subunit, putative. (606 aa)
	PDIG_06210	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (376 aa)
	PDIG_47630	rRNA maturation protein (Nop14), putative. (909 aa)
	PDIG_46960	Nucleolus protein required for cell viability, putative. (221 aa)
	PDIG_34680	Uncharacterized protein. (308 aa)
	PDIG_19470	Exosome complex exonuclease Rrp4, putative. (392 aa)
	PDIG_14920	Sas10/Utp3 family protein. (624 aa)
	PDIG_19620	RNA processing protein Emg1, putative. (259 aa)
	PDIG_19250	U3 small nucleolar RNA-associated protein 22. (1071 aa)
	PDIG_15000	Cell wall biogenesis protein phosphatase Ssd1, putative. (1362 aa)
	PDIG_04780	40S ribosomal protein S9. (190 aa)
	PDIG_01070	Small nucleolar ribonucleoprotein complex subunit, putative. (972 aa)

Your Current Organism:

Penicillium digitatum

NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAT10	PDIG_01070	K9FVA9	K9H3Q2	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Small nucleolar ribonucleoprotein complex subunit, putative.	0.995
NAT10	PDIG_01110	K9FVA9	K9GCS0	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Small nucleolar ribonucleoprotein complex subunit, putative.	0.994
NAT10	PDIG_04780	K9FVA9	K9H1J1	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	40S ribosomal protein S9.	0.938
NAT10	PDIG_05770	K9FVA9	K9GAW4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	WD_REPEATS_REGION domain-containing protein.	0.994
NAT10	PDIG_06210	K9FVA9	K9GDD0	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.994
NAT10	PDIG_06780	K9FVA9	K9GAG6	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	ATP dependent RNA helicase (Rok1), putative.	0.877
NAT10	PDIG_07670	K9FVA9	K9GC39	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Exosome complex subunit Csl4, putative.	0.755
NAT10	PDIG_09530	K9FVA9	K9GBX9	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Sec2p domain-containing protein.	0.694
NAT10	PDIG_14570	K9FVA9	K9G8X2	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	RNA-3'-phosphate cyclase family protein.	0.989
NAT10	PDIG_14920	K9FVA9	K9GRX9	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Sas10/Utp3 family protein.	0.986
NAT10	PDIG_15000	K9FVA9	K9GWI0	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Cell wall biogenesis protein phosphatase Ssd1, putative.	0.672
NAT10	PDIG_18550	K9FVA9	K9G6B0	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Ribosomal small subunit assembly protein, putative.	0.991
NAT10	PDIG_18870	K9FVA9	K9G4A8	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	WD repeat protein.	0.991
NAT10	PDIG_19250	K9FVA9	K9GUE7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	U3 small nucleolar RNA-associated protein 22.	0.998
NAT10	PDIG_19470	K9FVA9	K9GPZ8	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Exosome complex exonuclease Rrp4, putative.	0.754
NAT10	PDIG_19620	K9FVA9	K9GU02	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	RNA processing protein Emg1, putative.	0.975
NAT10	PDIG_21410	K9FVA9	K9G4G2	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Nucleolar protein nop5.	0.998
NAT10	PDIG_25610	K9FVA9	K9G0H3	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	RIO1 family protein kinase, putative.	0.637
NAT10	PDIG_27720	K9FVA9	K9G2Y4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	3' exoribonuclease family protein.	0.735
NAT10	PDIG_30280	K9FVA9	K9G0Q5	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Nonsense-mediated mRNA decay protein (Nmd5), putative.	0.712