(11 nodes) Autophagy - other network (Penicillium digitatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDIG_73160	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (947 aa)
	PDIG_63150	Serine/threonine protein kinase (Pdd7p), putative. (956 aa)
	PDIG_74520	Autophagy regulatory protein Atg2, putative. (2096 aa)
	PDIG_32580	Autophagy-related protein 3. (363 aa)
	PDIG_25660	Protein-vacuolar targeting protein Atg18, putative. (426 aa)
	PDIG_25050	Atg16p. (206 aa)
	PDIG_18990	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy. (401 aa)
	PDIG_17530	Uncharacterized protein. (442 aa)
	PDIG_47420	Autophagy ubiquitin-activating enzyme ApgG, putative. (355 aa)
	PDIG_43470	Autophagy-related protein. (118 aa)
	PDIG_44350	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (173 aa)

Your Current Organism:

Penicillium digitatum

NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDIG_17530	PDIG_18990	K9G6J3	K9G400	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	0.483
PDIG_17530	PDIG_25050	K9G6J3	K9G0W5	Uncharacterized protein.	Atg16p.	0.954
PDIG_17530	PDIG_25660	K9G6J3	K9G0H5	Uncharacterized protein.	Protein-vacuolar targeting protein Atg18, putative.	0.918
PDIG_17530	PDIG_32580	K9G6J3	K9FZI5	Uncharacterized protein.	Autophagy-related protein 3.	0.974
PDIG_17530	PDIG_43470	K9G6J3	K9GC61	Uncharacterized protein.	Autophagy-related protein.	0.879
PDIG_17530	PDIG_44350	K9G6J3	K9GGZ8	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.976
PDIG_17530	PDIG_47420	K9G6J3	K9GAN4	Uncharacterized protein.	Autophagy ubiquitin-activating enzyme ApgG, putative.	0.855
PDIG_17530	PDIG_63150	K9G6J3	K9FLL9	Uncharacterized protein.	Serine/threonine protein kinase (Pdd7p), putative.	0.930
PDIG_17530	PDIG_73160	K9G6J3	K9FDK5	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.544
PDIG_17530	PDIG_74520	K9G6J3	K9FWU0	Uncharacterized protein.	Autophagy regulatory protein Atg2, putative.	0.418
PDIG_18990	PDIG_17530	K9G400	K9G6J3	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	Uncharacterized protein.	0.483
PDIG_18990	PDIG_25050	K9G400	K9G0W5	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	Atg16p.	0.558
PDIG_18990	PDIG_25660	K9G400	K9G0H5	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	Protein-vacuolar targeting protein Atg18, putative.	0.788
PDIG_18990	PDIG_32580	K9G400	K9FZI5	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	Autophagy-related protein 3.	0.833
PDIG_18990	PDIG_43470	K9G400	K9GC61	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	Autophagy-related protein.	0.999
PDIG_18990	PDIG_44350	K9G400	K9GGZ8	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.725
PDIG_18990	PDIG_47420	K9G400	K9GAN4	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	Autophagy ubiquitin-activating enzyme ApgG, putative.	0.718
PDIG_18990	PDIG_63150	K9G400	K9FLL9	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	Serine/threonine protein kinase (Pdd7p), putative.	0.994
PDIG_18990	PDIG_73160	K9G400	K9FDK5	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.619
PDIG_18990	PDIG_74520	K9G400	K9FWU0	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy.	Autophagy regulatory protein Atg2, putative.	0.551