15 items (Penicillium digitatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDIG_71250	rRNA biogenesis protein RRP5, putative. (2158 aa)
	PDIG_58710	Pre-rRNA-processing protein pno1. (255 aa)
	PDIG_58550	PINc domain-containing protein. (193 aa)
	PDIG_51110	Uncharacterized protein. (835 aa)
	PDIG_89440	Ribosome biogenesis protein Noc4, putative. (549 aa)
	PDIG_21410	Nucleolar protein nop5. (576 aa)
	PDIG_69760	Ribosome biogenesis protein (Bms1), putative. (1180 aa)
	PDIG_14570	RNA-3'-phosphate cyclase family protein. (402 aa)
	PDIG_51600	Small nucleolar ribonucleoprotein complex subunit Utp14, putatrive. (957 aa)
	PDIG_05770	WD_REPEATS_REGION domain-containing protein. (956 aa)
	PDIG_44120	Small nucleolar ribonucleoprotein complex subunit, putative. (531 aa)
	PDIG_54040	WD_REPEATS_REGION domain-containing protein. (921 aa)
	PDIG_01110	Small nucleolar ribonucleoprotein complex subunit, putative. (606 aa)
	PDIG_46960	Nucleolus protein required for cell viability, putative. (221 aa)
	PDIG_01070	Small nucleolar ribonucleoprotein complex subunit, putative. (972 aa)

Your Current Organism:

Penicillium digitatum

NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDIG_01070	PDIG_01110	K9H3Q2	K9GCS0	Small nucleolar ribonucleoprotein complex subunit, putative.	Small nucleolar ribonucleoprotein complex subunit, putative.	0.997
PDIG_01070	PDIG_05770	K9H3Q2	K9GAW4	Small nucleolar ribonucleoprotein complex subunit, putative.	WD_REPEATS_REGION domain-containing protein.	0.999
PDIG_01070	PDIG_14570	K9H3Q2	K9G8X2	Small nucleolar ribonucleoprotein complex subunit, putative.	RNA-3'-phosphate cyclase family protein.	0.989
PDIG_01070	PDIG_21410	K9H3Q2	K9G4G2	Small nucleolar ribonucleoprotein complex subunit, putative.	Nucleolar protein nop5.	0.998
PDIG_01070	PDIG_44120	K9H3Q2	K9GCA8	Small nucleolar ribonucleoprotein complex subunit, putative.	Small nucleolar ribonucleoprotein complex subunit, putative.	0.998
PDIG_01070	PDIG_46960	K9H3Q2	K9GFM1	Small nucleolar ribonucleoprotein complex subunit, putative.	Nucleolus protein required for cell viability, putative.	0.961
PDIG_01070	PDIG_51110	K9H3Q2	K9FNR0	Small nucleolar ribonucleoprotein complex subunit, putative.	Uncharacterized protein.	0.820
PDIG_01070	PDIG_51600	K9H3Q2	K9G902	Small nucleolar ribonucleoprotein complex subunit, putative.	Small nucleolar ribonucleoprotein complex subunit Utp14, putatrive.	0.996
PDIG_01070	PDIG_54040	K9H3Q2	K9GCF4	Small nucleolar ribonucleoprotein complex subunit, putative.	WD_REPEATS_REGION domain-containing protein.	0.999
PDIG_01070	PDIG_58550	K9H3Q2	K9FLQ4	Small nucleolar ribonucleoprotein complex subunit, putative.	PINc domain-containing protein.	0.989
PDIG_01070	PDIG_58710	K9H3Q2	K9FKR0	Small nucleolar ribonucleoprotein complex subunit, putative.	Pre-rRNA-processing protein pno1.	0.945
PDIG_01070	PDIG_69760	K9H3Q2	K9G4L5	Small nucleolar ribonucleoprotein complex subunit, putative.	Ribosome biogenesis protein (Bms1), putative.	0.998
PDIG_01070	PDIG_71250	K9H3Q2	K9FE32	Small nucleolar ribonucleoprotein complex subunit, putative.	rRNA biogenesis protein RRP5, putative.	0.990
PDIG_01070	PDIG_89440	K9H3Q2	K9FNY1	Small nucleolar ribonucleoprotein complex subunit, putative.	Ribosome biogenesis protein Noc4, putative.	0.996
PDIG_01110	PDIG_01070	K9GCS0	K9H3Q2	Small nucleolar ribonucleoprotein complex subunit, putative.	Small nucleolar ribonucleoprotein complex subunit, putative.	0.997
PDIG_01110	PDIG_05770	K9GCS0	K9GAW4	Small nucleolar ribonucleoprotein complex subunit, putative.	WD_REPEATS_REGION domain-containing protein.	0.990
PDIG_01110	PDIG_14570	K9GCS0	K9G8X2	Small nucleolar ribonucleoprotein complex subunit, putative.	RNA-3'-phosphate cyclase family protein.	0.995
PDIG_01110	PDIG_21410	K9GCS0	K9G4G2	Small nucleolar ribonucleoprotein complex subunit, putative.	Nucleolar protein nop5.	0.999
PDIG_01110	PDIG_44120	K9GCS0	K9GCA8	Small nucleolar ribonucleoprotein complex subunit, putative.	Small nucleolar ribonucleoprotein complex subunit, putative.	0.997
PDIG_01110	PDIG_46960	K9GCS0	K9GFM1	Small nucleolar ribonucleoprotein complex subunit, putative.	Nucleolus protein required for cell viability, putative.	0.968