31 items (Penicillium digitatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDIG_15010	Uncharacterized protein. (506 aa)
	PDIG_38070	Uncharacterized protein. (880 aa)
	PDIG_90120	ATP dependent RNA helicase (Dbp5), putative; Belongs to the DEAD box helicase family. (487 aa)
	PDIG_87370	Peptidase S59 domain-containing protein. (1999 aa)
	PDIG_85210	Non-repetitive nucleoporin, putative. (1375 aa)
	PDIG_84440	Nuclear pore complex subunit Nup133, putative. (1326 aa)
	PDIG_78060	Nucleoporin (Nup184), putative. (1814 aa)
	PDIG_78470	Nucleoporin, putative. (435 aa)
	PDIG_48820	Nuclear pore complex subunit Nup192, putative. (1665 aa)
	PDIG_80500	Nuclear transport factor NTF-2, putative. (125 aa)
	PDIG_42000	Uncharacterized protein. (1326 aa)
	PDIG_43020	Nuclear pore complex protein (SonA), putative. (361 aa)
	PDIG_33670	Uncharacterized protein. (1169 aa)
	PDIG_13010	Uncharacterized protein. (260 aa)
	PDIG_09220	Nuclear pore complex subunit Nup159, putative. (1530 aa)
	PDIG_12790	Nucleoporin NUP49/NSP49, putative. (482 aa)
	PDIG_01600	Nuclear envelope protein, putative. (581 aa)
	PDIG_06030	Nuclear pore protein (SEH1), putative; Belongs to the WD repeat SEC13 family. (386 aa)
	PDIG_03460	Uncharacterized protein. (525 aa)
	PDIG_35080	Uncharacterized protein. (268 aa)
	PDIG_78940	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1043 aa)
	PDIG_25000	Uncharacterized protein. (808 aa)
	PDIG_24990	Ran-specific GTPase-activating protein 1, putative. (247 aa)
	PDIG_23870	NTF2 domain-containing protein. (161 aa)
	PDIG_22440	Nuclear pore protein (Nic96), putative. (1052 aa)
	PDIG_84150	Nuclear pore complex subunit (SEC13), putative; Belongs to the WD repeat SEC13 family. (309 aa)
	PDIG_03470	ELYS domain-containing protein. (309 aa)
	PDIG_19550	Uncharacterized protein. (558 aa)
	PDIG_19410	Nuclear envelope pore membrane protein, putative. (1257 aa)
	PDIG_18230	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (1148 aa)
	PDIG_62810	Nucleoporin Nsp1, putative. (655 aa)

Your Current Organism:

Penicillium digitatum

NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDIG_01600	PDIG_03460	K9GYI7	K9H2H7	Nuclear envelope protein, putative.	Uncharacterized protein.	0.677
PDIG_01600	PDIG_12790	K9GYI7	K9GY77	Nuclear envelope protein, putative.	Nucleoporin NUP49/NSP49, putative.	0.405
PDIG_01600	PDIG_19410	K9GYI7	K9G729	Nuclear envelope protein, putative.	Nuclear envelope pore membrane protein, putative.	0.765
PDIG_01600	PDIG_22440	K9GYI7	K9G3I2	Nuclear envelope protein, putative.	Nuclear pore protein (Nic96), putative.	0.538
PDIG_01600	PDIG_33670	K9GYI7	K9GM89	Nuclear envelope protein, putative.	Uncharacterized protein.	0.771
PDIG_01600	PDIG_35080	K9GYI7	K9FWJ4	Nuclear envelope protein, putative.	Uncharacterized protein.	0.435
PDIG_01600	PDIG_42000	K9GYI7	K9FUF7	Nuclear envelope protein, putative.	Uncharacterized protein.	0.447
PDIG_01600	PDIG_43020	K9GYI7	K9GHK3	Nuclear envelope protein, putative.	Nuclear pore complex protein (SonA), putative.	0.654
PDIG_01600	PDIG_48820	K9GYI7	K9FPY6	Nuclear envelope protein, putative.	Nuclear pore complex subunit Nup192, putative.	0.599
PDIG_01600	PDIG_78060	K9GYI7	K9F9W5	Nuclear envelope protein, putative.	Nucleoporin (Nup184), putative.	0.784
PDIG_01600	PDIG_78940	K9GYI7	K9FYJ8	Nuclear envelope protein, putative.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.548
PDIG_01600	PDIG_85210	K9GYI7	K9F6S2	Nuclear envelope protein, putative.	Non-repetitive nucleoporin, putative.	0.591
PDIG_01600	PDIG_87370	K9GYI7	K9F5U4	Nuclear envelope protein, putative.	Peptidase S59 domain-containing protein.	0.746
PDIG_03460	PDIG_01600	K9H2H7	K9GYI7	Uncharacterized protein.	Nuclear envelope protein, putative.	0.677
PDIG_03460	PDIG_06030	K9H2H7	K9H1T0	Uncharacterized protein.	Nuclear pore protein (SEH1), putative; Belongs to the WD repeat SEC13 family.	0.605
PDIG_03460	PDIG_09220	K9H2H7	K9GVF2	Uncharacterized protein.	Nuclear pore complex subunit Nup159, putative.	0.860
PDIG_03460	PDIG_13010	K9H2H7	K9GTK1	Uncharacterized protein.	Uncharacterized protein.	0.580
PDIG_03460	PDIG_15010	K9H2H7	K9G8T7	Uncharacterized protein.	Uncharacterized protein.	0.925
PDIG_03460	PDIG_22440	K9H2H7	K9G3I2	Uncharacterized protein.	Nuclear pore protein (Nic96), putative.	0.816
PDIG_03460	PDIG_24990	K9H2H7	K9G2Q7	Uncharacterized protein.	Ran-specific GTPase-activating protein 1, putative.	0.643