(56 nodes) Small ribosomal subunit network (Penicillium digitatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	PDIG_75610	Ribosomal protein S13p/S18e; Belongs to the universal ribosomal protein uS13 family. (155 aa)
	PDIG_66580	Uncharacterized protein. (503 aa)
	PDIG_61250	Uncharacterized protein. (170 aa)
	PDIG_61450	Fe superoxide dismutase, putative. (323 aa)
	PDIG_60480	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (210 aa)
	PDIG_60880	Uncharacterized protein. (305 aa)
	PDIG_65560	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (253 aa)
	PDIG_60400	Uncharacterized protein. (521 aa)
	PDIG_51720	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (102 aa)
	PDIG_48910	Mitochondrial ribosomal protein DAP3, putative. (502 aa)
	PDIG_48080	37S ribosomal protein S12. (202 aa)
	PDIG_46070	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (295 aa)
	PDIG_73920	G-protein comlpex beta subunit CpcB. (316 aa)
	PDIG_74470	40S ribosomal protein S10b. (165 aa)
	PDIG_73580	37S ribosomal protein Rsm24, putative. (385 aa)
	PDIG_32340	Uncharacterized protein. (104 aa)
	PDIG_37860	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (59 aa)
	PDIG_30540	Uncharacterized protein. (234 aa)
	PDIG_66570	Uncharacterized protein. (117 aa)
	PDIG_63930	TYR_PHOSPHATASE_2 domain-containing protein. (903 aa)
	PDIG_64080	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (148 aa)
	PDIG_64480	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (264 aa)
	PDIG_21320	30S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. (300 aa)
	PDIG_24210	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (494 aa)
	PDIG_25830	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (403 aa)
	PDIG_19580	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (656 aa)
	PDIG_67500	37S ribosomal protein Mrp17. (121 aa)
	PDIG_63340	Uncharacterized protein. (348 aa)
	PDIG_17460	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (260 aa)
	PDIG_60950	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (158 aa)
	PDIG_48890	Uncharacterized protein. (192 aa)
	PDIG_55910	40S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PDIG_04500	40S ribosomal protein S27. (82 aa)
	PDIG_03450	40S ribosomal protein S10a. (116 aa)
	PDIG_06870	40S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS7 family. (211 aa)
	PDIG_00960	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (119 aa)
	PDIG_42540	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	PDIG_51630	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (584 aa)
	PDIG_48970	Ribosomal protein S28e. (68 aa)
	PDIG_01440	37S ribosomal protein S25, mitochondrial. (259 aa)
	PDIG_48100	Topisomerase II associated protein (Pat1), putative. (818 aa)
	PDIG_36890	Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated. (401 aa)
	PDIG_36990	SET domain-containing protein. (563 aa)
	PDIG_35160	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	PDIG_40200	30S ribosomal subunit S4, putative. (439 aa)
	PDIG_32320	Uncharacterized protein. (389 aa)
	PDIG_40750	Uncharacterized protein. (106 aa)
	PDIG_29520	40S ribosomal protein Rps16, putative; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	PDIG_29800	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family. (151 aa)
	PDIG_30100	40S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	PDIG_25920	Ribosomal protein S19, putative; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (302 aa)
	PDIG_06610	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (96 aa)
	PDIG_04680	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (260 aa)
	PDIG_04780	40S ribosomal protein S9. (190 aa)

Your Current Organism:

Penicillium digitatum

NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDIG_00960	PDIG_01440	K9GCQ5	K9GER4	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	37S ribosomal protein S25, mitochondrial.	0.913
PDIG_00960	PDIG_03450	K9GCQ5	K9GBN0	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S10a.	0.996
PDIG_00960	PDIG_04500	K9GCQ5	K9GB52	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S27.	0.995
PDIG_00960	PDIG_04680	K9GCQ5	K9H1I5	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.989
PDIG_00960	PDIG_04780	K9GCQ5	K9H1J1	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S9.	0.989
PDIG_00960	PDIG_06610	K9GCQ5	K9GWF4	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.995
PDIG_00960	PDIG_06870	K9GCQ5	K9GCH8	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS7 family.	0.996
PDIG_00960	PDIG_17460	K9GCQ5	K9G7S1	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.996
PDIG_00960	PDIG_21320	K9GCQ5	K9G2R0	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	30S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.994
PDIG_00960	PDIG_24210	K9GCQ5	K9G2Z6	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.906
PDIG_00960	PDIG_25830	K9GCQ5	K9G3J1	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.994
PDIG_00960	PDIG_25920	K9GCQ5	K9GQV1	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Ribosomal protein S19, putative; Belongs to the universal ribosomal protein uS19 family.	0.960
PDIG_00960	PDIG_29520	K9GCQ5	K9GJJ8	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein Rps16, putative; Belongs to the universal ribosomal protein uS9 family.	0.996
PDIG_00960	PDIG_29800	K9GCQ5	K9GP62	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S14 (CRP2); Belongs to the universal ribosomal protein uS11 family.	0.996
PDIG_00960	PDIG_30100	K9GCQ5	K9GP85	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family.	0.996
PDIG_00960	PDIG_30540	K9GCQ5	K9G1M0	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein.	0.919
PDIG_00960	PDIG_32320	K9GCQ5	K9GIK7	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein.	0.909
PDIG_00960	PDIG_32340	K9GCQ5	K9FXR6	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein.	0.989
PDIG_00960	PDIG_35160	K9GCQ5	K9GH00	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.996
PDIG_00960	PDIG_37860	K9GCQ5	K9FYG0	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.994