(28 nodes) Macroautophagy network (Penicillium digitatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDIG_07660	Vac8p. (578 aa)
	PDIG_11620	Uncharacterized protein. (327 aa)
	PDIG_81910	Atg11p. (1261 aa)
	PDIG_81490	Vacuolar assembly protein, putative. (1287 aa)
	PDIG_72080	Uncharacterized protein. (209 aa)
	PDIG_70880	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily. (978 aa)
	PDIG_58800	Atg10p. (206 aa)
	PDIG_54480	Vacuolar serine protease; Belongs to the peptidase S8 family. (496 aa)
	PDIG_87040	t-SNARE coiled-coil homology domain-containing protein. (197 aa)
	PDIG_43240	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (771 aa)
	PDIG_32040	Phosphatidylinositol 3-kinase VPS34. (910 aa)
	PDIG_32190	Phosphatidylinositol 3,5-bisphosphate-binding protein, putative. (405 aa)
	PDIG_29240	ADP-ribosylation factor, putative. (169 aa)
	PDIG_59890	SNF7 family protein. (221 aa)
	PDIG_18610	Trafficking protein particle complex subunit BET3. (191 aa)
	PDIG_19430	Uncharacterized protein. (764 aa)
	PDIG_11810	Cdc48p; Belongs to the AAA ATPase family. (819 aa)
	PDIG_50850	Uncharacterized protein. (153 aa)
	PDIG_13960	Vps15p. (1602 aa)
	PDIG_11630	Uncharacterized protein. (367 aa)
	PDIG_05070	Uncharacterized protein. (311 aa)
	PDIG_47030	BET3 family protein. (96 aa)
	PDIG_54870	Uncharacterized protein. (180 aa)
	PDIG_53190	Cdc48-dependent protein degradation adaptor protein (Shp1), putative. (400 aa)
	PDIG_01490	Uncharacterized protein. (862 aa)
	PDIG_44350	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (173 aa)
	PDIG_31760	Uncharacterized protein. (209 aa)
	PDIG_35390	Uncharacterized protein. (525 aa)

Your Current Organism:

Penicillium digitatum

NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDIG_05070	PDIG_44350	K9GAN1	K9GGZ8	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.449
PDIG_05070	PDIG_70880	K9GAN1	K9FIJ7	Uncharacterized protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.984
PDIG_05070	PDIG_81910	K9GAN1	K9FA06	Uncharacterized protein.	Atg11p.	0.853
PDIG_07660	PDIG_70880	K9GVR7	K9FIJ7	Vac8p.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.936
PDIG_07660	PDIG_81910	K9GVR7	K9FA06	Vac8p.	Atg11p.	0.587
PDIG_11620	PDIG_11630	K9GYF8	K9GA55	Uncharacterized protein.	Uncharacterized protein.	0.930
PDIG_11620	PDIG_18610	K9GYF8	K9G4R5	Uncharacterized protein.	Trafficking protein particle complex subunit BET3.	0.976
PDIG_11620	PDIG_47030	K9GYF8	K9GB20	Uncharacterized protein.	BET3 family protein.	0.967
PDIG_11630	PDIG_11620	K9GA55	K9GYF8	Uncharacterized protein.	Uncharacterized protein.	0.930
PDIG_11630	PDIG_18610	K9GA55	K9G4R5	Uncharacterized protein.	Trafficking protein particle complex subunit BET3.	0.976
PDIG_11630	PDIG_47030	K9GA55	K9GB20	Uncharacterized protein.	BET3 family protein.	0.967
PDIG_11810	PDIG_35390	K9G7R7	K9GLJ2	Cdc48p; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.589
PDIG_11810	PDIG_53190	K9G7R7	K9GC36	Cdc48p; Belongs to the AAA ATPase family.	Cdc48-dependent protein degradation adaptor protein (Shp1), putative.	0.998
PDIG_11810	PDIG_59890	K9G7R7	K9G4H3	Cdc48p; Belongs to the AAA ATPase family.	SNF7 family protein.	0.614
PDIG_11810	PDIG_72080	K9G7R7	K9FDV1	Cdc48p; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.566
PDIG_11810	PDIG_87040	K9G7R7	K9FQB4	Cdc48p; Belongs to the AAA ATPase family.	t-SNARE coiled-coil homology domain-containing protein.	0.685
PDIG_13960	PDIG_19430	K9G979	K9G5S0	Vps15p.	Uncharacterized protein.	0.534
PDIG_13960	PDIG_31760	K9G979	K9GJ37	Vps15p.	Uncharacterized protein.	0.889
PDIG_13960	PDIG_32040	K9G979	K9FXP7	Vps15p.	Phosphatidylinositol 3-kinase VPS34.	0.999
PDIG_13960	PDIG_32190	K9G979	K9FXQ5	Vps15p.	Phosphatidylinositol 3,5-bisphosphate-binding protein, putative.	0.448