24 items (Penicillium digitatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PDIG_62810	Nucleoporin Nsp1, putative. (655 aa)
	PDIG_61560	Nucleolar protein Jip5, putative. (407 aa)
	PDIG_38070	Uncharacterized protein. (880 aa)
	PDIG_43020	Nuclear pore complex protein (SonA), putative. (361 aa)
	PDIG_19000	Histone H2B; Belongs to the histone H2B family. (141 aa)
	PDIG_09220	Nuclear pore complex subunit Nup159, putative. (1530 aa)
	PDIG_01600	Nuclear envelope protein, putative. (581 aa)
	PDIG_03460	Uncharacterized protein. (525 aa)
	PDIG_87370	Peptidase S59 domain-containing protein. (1999 aa)
	PDIG_85210	Non-repetitive nucleoporin, putative. (1375 aa)
	PDIG_84440	Nuclear pore complex subunit Nup133, putative. (1326 aa)
	PDIG_78060	Nucleoporin (Nup184), putative. (1814 aa)
	PDIG_78470	Nucleoporin, putative. (435 aa)
	PDIG_73860	Uncharacterized protein. (974 aa)
	PDIG_74610	Filament-forming protein (Tpr/p270), putative. (2016 aa)
	PDIG_48820	Nuclear pore complex subunit Nup192, putative. (1665 aa)
	PDIG_81700	Eukaryotic translation initiation factor eIF-2C4, putative. (1056 aa)
	PDIG_89570	Uncharacterized protein. (1066 aa)
	PDIG_42000	Uncharacterized protein. (1326 aa)
	PDIG_78940	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1043 aa)
	PDIG_30280	Nonsense-mediated mRNA decay protein (Nmd5), putative. (1022 aa)
	PDIG_25000	Uncharacterized protein. (808 aa)
	PDIG_24990	Ran-specific GTPase-activating protein 1, putative. (247 aa)
	PDIG_22440	Nuclear pore protein (Nic96), putative. (1052 aa)

Your Current Organism:

Penicillium digitatum

NCBI taxonomy Id: 1170229
Other names: P. digitatum PHI26, Penicillium digitatum PHI26

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDIG_01600	PDIG_03460	K9GYI7	K9H2H7	Nuclear envelope protein, putative.	Uncharacterized protein.	0.677
PDIG_01600	PDIG_22440	K9GYI7	K9G3I2	Nuclear envelope protein, putative.	Nuclear pore protein (Nic96), putative.	0.538
PDIG_01600	PDIG_42000	K9GYI7	K9FUF7	Nuclear envelope protein, putative.	Uncharacterized protein.	0.447
PDIG_01600	PDIG_43020	K9GYI7	K9GHK3	Nuclear envelope protein, putative.	Nuclear pore complex protein (SonA), putative.	0.654
PDIG_01600	PDIG_48820	K9GYI7	K9FPY6	Nuclear envelope protein, putative.	Nuclear pore complex subunit Nup192, putative.	0.599
PDIG_01600	PDIG_74610	K9GYI7	K9FG91	Nuclear envelope protein, putative.	Filament-forming protein (Tpr/p270), putative.	0.778
PDIG_01600	PDIG_78060	K9GYI7	K9F9W5	Nuclear envelope protein, putative.	Nucleoporin (Nup184), putative.	0.784
PDIG_01600	PDIG_78940	K9GYI7	K9FYJ8	Nuclear envelope protein, putative.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.548
PDIG_01600	PDIG_85210	K9GYI7	K9F6S2	Nuclear envelope protein, putative.	Non-repetitive nucleoporin, putative.	0.591
PDIG_01600	PDIG_87370	K9GYI7	K9F5U4	Nuclear envelope protein, putative.	Peptidase S59 domain-containing protein.	0.746
PDIG_03460	PDIG_01600	K9H2H7	K9GYI7	Uncharacterized protein.	Nuclear envelope protein, putative.	0.677
PDIG_03460	PDIG_09220	K9H2H7	K9GVF2	Uncharacterized protein.	Nuclear pore complex subunit Nup159, putative.	0.860
PDIG_03460	PDIG_22440	K9H2H7	K9G3I2	Uncharacterized protein.	Nuclear pore protein (Nic96), putative.	0.816
PDIG_03460	PDIG_24990	K9H2H7	K9G2Q7	Uncharacterized protein.	Ran-specific GTPase-activating protein 1, putative.	0.643
PDIG_03460	PDIG_25000	K9H2H7	K9G0V9	Uncharacterized protein.	Uncharacterized protein.	0.643
PDIG_03460	PDIG_30280	K9H2H7	K9G0Q5	Uncharacterized protein.	Nonsense-mediated mRNA decay protein (Nmd5), putative.	0.724
PDIG_03460	PDIG_43020	K9H2H7	K9GHK3	Uncharacterized protein.	Nuclear pore complex protein (SonA), putative.	0.983
PDIG_03460	PDIG_62810	K9H2H7	K9G7Y7	Uncharacterized protein.	Nucleoporin Nsp1, putative.	0.667
PDIG_03460	PDIG_74610	K9H2H7	K9FG91	Uncharacterized protein.	Filament-forming protein (Tpr/p270), putative.	0.892
PDIG_03460	PDIG_78060	K9H2H7	K9F9W5	Uncharacterized protein.	Nucleoporin (Nup184), putative.	0.637