(26 nodes) Citrate cycle (TCA cycle), and Pyruvate phosphate dikinase, AMP/ATP-binding domain network (Fischerella sp. PCC9605)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000517105_00014	Unannotated protein. (528 aa)
	GCA_000517105_00479	Unannotated protein. (575 aa)
	GCA_000517105_00501	Unannotated protein. (1020 aa)
	GCA_000517105_01007	Unannotated protein. (455 aa)
	GCA_000517105_01404	Unannotated protein. (606 aa)
	GCA_000517105_01521	Unannotated protein. (978 aa)
	GCA_000517105_01710	Unannotated protein. (814 aa)
	GCA_000517105_01988	Unannotated protein. (677 aa)
	GCA_000517105_02176	Unannotated protein. (334 aa)
	GCA_000517105_02236	Unannotated protein. (97 aa)
	GCA_000517105_02255	Unannotated protein. (325 aa)
	GCA_000517105_02972	Unannotated protein. (343 aa)
	GCA_000517105_03536	Unannotated protein. (378 aa)
	GCA_000517105_03647	Unannotated protein. (1246 aa)
	GCA_000517105_03717	Unannotated protein. (804 aa)
	GCA_000517105_04192	Unannotated protein. (410 aa)
	GCA_000517105_04193	Unannotated protein. (293 aa)
	GCA_000517105_04232	Unannotated protein. (473 aa)
	GCA_000517105_04257	Unannotated protein. (403 aa)
	GCA_000517105_04476	Unannotated protein. (889 aa)
	GCA_000517105_04515	Unannotated protein. (631 aa)
	GCA_000517105_04892	Unannotated protein. (463 aa)
	GCA_000517105_05635	Unannotated protein. (563 aa)
	GCA_000517105_05752	Unannotated protein. (831 aa)
	GCA_000517105_05822	Unannotated protein. (471 aa)
	GCA_000517105_06586	Unannotated protein. (1265 aa)

Your Current Organism:

Fischerella sp. PCC9605

NCBI taxonomy Id: 1173024
Other names: F. sp. PCC 9605, Fischerella sp. PCC 9605

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000517105_00014	GCA_000517105_00479	Unannotated protein.	Unannotated protein.	0.944
GCA_000517105_00014	GCA_000517105_01404	Unannotated protein.	Unannotated protein.	0.944
GCA_000517105_00014	GCA_000517105_01521	Unannotated protein.	Unannotated protein.	0.744
GCA_000517105_00014	GCA_000517105_01988	Unannotated protein.	Unannotated protein.	0.944
GCA_000517105_00014	GCA_000517105_02176	Unannotated protein.	Unannotated protein.	0.427
GCA_000517105_00014	GCA_000517105_02236	Unannotated protein.	Unannotated protein.	0.652
GCA_000517105_00014	GCA_000517105_02255	Unannotated protein.	Unannotated protein.	0.648
GCA_000517105_00014	GCA_000517105_02972	Unannotated protein.	Unannotated protein.	0.416
GCA_000517105_00014	GCA_000517105_03647	Unannotated protein.	Unannotated protein.	0.968
GCA_000517105_00014	GCA_000517105_04192	Unannotated protein.	Unannotated protein.	0.616
GCA_000517105_00014	GCA_000517105_04193	Unannotated protein.	Unannotated protein.	0.677
GCA_000517105_00014	GCA_000517105_04892	Unannotated protein.	Unannotated protein.	0.688
GCA_000517105_00014	GCA_000517105_05635	Unannotated protein.	Unannotated protein.	0.573
GCA_000517105_00014	GCA_000517105_05822	Unannotated protein.	Unannotated protein.	0.565
GCA_000517105_00014	GCA_000517105_06586	Unannotated protein.	Unannotated protein.	0.968
GCA_000517105_00479	GCA_000517105_00014	Unannotated protein.	Unannotated protein.	0.944
GCA_000517105_00479	GCA_000517105_01007	Unannotated protein.	Unannotated protein.	0.875
GCA_000517105_00479	GCA_000517105_02176	Unannotated protein.	Unannotated protein.	0.999
GCA_000517105_00479	GCA_000517105_02236	Unannotated protein.	Unannotated protein.	0.681
GCA_000517105_00479	GCA_000517105_02255	Unannotated protein.	Unannotated protein.	0.907