(63 nodes) Pyrimidine metabolism network (Fischerella sp. PCC9605)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000517105_06587	Unannotated protein. (343 aa)
	GCA_000517105_06560	Unannotated protein. (630 aa)
	GCA_000517105_06322	Unannotated protein. (437 aa)
	GCA_000517105_06304	Unannotated protein. (215 aa)
	GCA_000517105_04823	Unannotated protein. (186 aa)
	GCA_000517105_04916	Unannotated protein. (183 aa)
	GCA_000517105_06303	Unannotated protein. (112 aa)
	GCA_000517105_04923	Unannotated protein. (263 aa)
	GCA_000517105_05007	Unannotated protein. (245 aa)
	GCA_000517105_05061	Unannotated protein. (213 aa)
	GCA_000517105_05255	Unannotated protein. (174 aa)
	GCA_000517105_05534	Unannotated protein. (103 aa)
	GCA_000517105_05640	Unannotated protein. (329 aa)
	GCA_000517105_02372	Unannotated protein. (216 aa)
	GCA_000517105_02415	Unannotated protein. (163 aa)
	GCA_000517105_02416	Unannotated protein. (206 aa)
	GCA_000517105_02706	Unannotated protein. (426 aa)
	GCA_000517105_02715	Unannotated protein. (239 aa)
	GCA_000517105_02792	Unannotated protein. (326 aa)
	GCA_000517105_02793	Unannotated protein. (481 aa)
	GCA_000517105_02897	Unannotated protein. (545 aa)
	GCA_000517105_02913	Unannotated protein. (90 aa)
	GCA_000517105_03085	Unannotated protein. (188 aa)
	GCA_000517105_03107	Unannotated protein. (92 aa)
	GCA_000517105_03109	Unannotated protein. (172 aa)
	GCA_000517105_03128	Unannotated protein. (489 aa)
	GCA_000517105_03198	Unannotated protein. (111 aa)
	GCA_000517105_03502	Unannotated protein. (765 aa)
	GCA_000517105_03533	Unannotated protein. (165 aa)
	GCA_000517105_03606	Unannotated protein. (388 aa)
	GCA_000517105_03695	Unannotated protein. (223 aa)
	GCA_000517105_03696	Unannotated protein. (508 aa)
	GCA_000517105_03764	Unannotated protein. (378 aa)
	GCA_000517105_03922	Unannotated protein. (113 aa)
	GCA_000517105_04017	Unannotated protein. (206 aa)
	GCA_000517105_04075	Unannotated protein. (356 aa)
	GCA_000517105_00830	Unannotated protein. (75 aa)
	GCA_000517105_00831	Unannotated protein. (82 aa)
	GCA_000517105_01127	Unannotated protein. (480 aa)
	GCA_000517105_01231	Unannotated protein. (356 aa)
	GCA_000517105_01362	Unannotated protein. (535 aa)
	GCA_000517105_01543	Unannotated protein. (1104 aa)
	GCA_000517105_01852	Unannotated protein. (138 aa)
	GCA_000517105_02329	Unannotated protein. (149 aa)
	GCA_000517105_00781	Unannotated protein. (441 aa)
	GCA_000517105_00728	Unannotated protein. (343 aa)
	GCA_000517105_00560	Unannotated protein. (242 aa)
	GCA_000517105_00496	Unannotated protein. (218 aa)
	GCA_000517105_00312	Unannotated protein. (405 aa)
	GCA_000517105_00291	Unannotated protein. (265 aa)
	GCA_000517105_00271	Unannotated protein. (267 aa)
	GCA_000517105_00149	Unannotated protein. (211 aa)
	GCA_000517105_00128	Unannotated protein. (367 aa)
	GCA_000517105_04697	Unannotated protein. (1039 aa)
	GCA_000517105_06165	Unannotated protein. (141 aa)
	GCA_000517105_05662	Unannotated protein. (796 aa)
	GCA_000517105_05811	Unannotated protein. (410 aa)
	GCA_000517105_05955	Unannotated protein. (341 aa)
	GCA_000517105_06044	Unannotated protein. (345 aa)
	GCA_000517105_06900	Unannotated protein. (143 aa)
	GCA_000517105_06723	Unannotated protein. (265 aa)
	GCA_000517105_06652	Unannotated protein. (171 aa)
	GCA_000517105_06646	Unannotated protein. (96 aa)

Your Current Organism:

Fischerella sp. PCC9605

NCBI taxonomy Id: 1173024
Other names: F. sp. PCC 9605, Fischerella sp. PCC 9605

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000517105_00149	GCA_000517105_00291	Unannotated protein.	Unannotated protein.	0.754
GCA_000517105_00149	GCA_000517105_00312	Unannotated protein.	Unannotated protein.	0.557
GCA_000517105_00149	GCA_000517105_00560	Unannotated protein.	Unannotated protein.	0.955
GCA_000517105_00149	GCA_000517105_01231	Unannotated protein.	Unannotated protein.	0.509
GCA_000517105_00149	GCA_000517105_01543	Unannotated protein.	Unannotated protein.	0.509
GCA_000517105_00149	GCA_000517105_02372	Unannotated protein.	Unannotated protein.	0.758
GCA_000517105_00149	GCA_000517105_02715	Unannotated protein.	Unannotated protein.	0.819
GCA_000517105_00149	GCA_000517105_03085	Unannotated protein.	Unannotated protein.	0.784
GCA_000517105_00149	GCA_000517105_03606	Unannotated protein.	Unannotated protein.	0.628
GCA_000517105_00149	GCA_000517105_04017	Unannotated protein.	Unannotated protein.	0.682
GCA_000517105_00149	GCA_000517105_04823	Unannotated protein.	Unannotated protein.	0.415
GCA_000517105_00149	GCA_000517105_05007	Unannotated protein.	Unannotated protein.	0.754
GCA_000517105_00149	GCA_000517105_05061	Unannotated protein.	Unannotated protein.	0.674
GCA_000517105_00149	GCA_000517105_05255	Unannotated protein.	Unannotated protein.	0.415
GCA_000517105_00149	GCA_000517105_05640	Unannotated protein.	Unannotated protein.	0.723
GCA_000517105_00149	GCA_000517105_06560	Unannotated protein.	Unannotated protein.	0.619
GCA_000517105_00149	GCA_000517105_06587	Unannotated protein.	Unannotated protein.	0.557
GCA_000517105_00149	GCA_000517105_06900	Unannotated protein.	Unannotated protein.	0.698
GCA_000517105_00271	GCA_000517105_01362	Unannotated protein.	Unannotated protein.	0.640
GCA_000517105_00271	GCA_000517105_03085	Unannotated protein.	Unannotated protein.	0.576