(34 nodes) Alanine, aspartate and glutamate metabolism network (Fischerella sp. PCC9605)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000517105_00267	Unannotated protein. (560 aa)
	GCA_000517105_00309	Unannotated protein. (324 aa)
	GCA_000517105_00822	Unannotated protein. (449 aa)
	GCA_000517105_00929	Unannotated protein. (472 aa)
	GCA_000517105_01007	Unannotated protein. (455 aa)
	GCA_000517105_01085	Unannotated protein. (362 aa)
	GCA_000517105_01129	Unannotated protein. (429 aa)
	GCA_000517105_01231	Unannotated protein. (356 aa)
	GCA_000517105_01364	Unannotated protein. (324 aa)
	GCA_000517105_01409	Unannotated protein. (471 aa)
	GCA_000517105_01543	Unannotated protein. (1104 aa)
	GCA_000517105_01883	Unannotated protein. (308 aa)
	GCA_000517105_01994	Unannotated protein. (419 aa)
	GCA_000517105_02957	Unannotated protein. (997 aa)
	GCA_000517105_03157	Unannotated protein. (84 aa)
	GCA_000517105_03214	Unannotated protein. (499 aa)
	GCA_000517105_03299	Unannotated protein. (225 aa)
	GCA_000517105_03313	Unannotated protein. (447 aa)
	GCA_000517105_03472	Unannotated protein. (482 aa)
	GCA_000517105_03606	Unannotated protein. (388 aa)
	GCA_000517105_03641	Unannotated protein. (675 aa)
	GCA_000517105_03734	Unannotated protein. (317 aa)
	GCA_000517105_03844	Unannotated protein. (283 aa)
	GCA_000517105_03968	Unannotated protein. (431 aa)
	GCA_000517105_04567	Unannotated protein. (294 aa)
	GCA_000517105_04875	Unannotated protein. (294 aa)
	GCA_000517105_05094	Unannotated protein. (318 aa)
	GCA_000517105_05196	Unannotated protein. (388 aa)
	GCA_000517105_05472	Unannotated protein. (633 aa)
	GCA_000517105_05640	Unannotated protein. (329 aa)
	GCA_000517105_06311	Unannotated protein. (96 aa)
	GCA_000517105_06866	Unannotated protein. (461 aa)
	GCA_000517105_06874	Unannotated protein. (287 aa)
	GCA_000517105_06888	Unannotated protein. (400 aa)

Your Current Organism:

Fischerella sp. PCC9605

NCBI taxonomy Id: 1173024
Other names: F. sp. PCC 9605, Fischerella sp. PCC 9605

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000517105_00267	GCA_000517105_00929	Unannotated protein.	Unannotated protein.	0.454
GCA_000517105_00267	GCA_000517105_01007	Unannotated protein.	Unannotated protein.	0.471
GCA_000517105_00267	GCA_000517105_03214	Unannotated protein.	Unannotated protein.	0.650
GCA_000517105_00267	GCA_000517105_03313	Unannotated protein.	Unannotated protein.	0.789
GCA_000517105_00267	GCA_000517105_05196	Unannotated protein.	Unannotated protein.	0.720
GCA_000517105_00267	GCA_000517105_05472	Unannotated protein.	Unannotated protein.	0.402
GCA_000517105_00267	GCA_000517105_05640	Unannotated protein.	Unannotated protein.	0.628
GCA_000517105_00267	GCA_000517105_06866	Unannotated protein.	Unannotated protein.	0.700
GCA_000517105_00267	GCA_000517105_06888	Unannotated protein.	Unannotated protein.	0.694
GCA_000517105_00309	GCA_000517105_01007	Unannotated protein.	Unannotated protein.	0.460
GCA_000517105_00309	GCA_000517105_01231	Unannotated protein.	Unannotated protein.	0.578
GCA_000517105_00309	GCA_000517105_01543	Unannotated protein.	Unannotated protein.	0.578
GCA_000517105_00309	GCA_000517105_02957	Unannotated protein.	Unannotated protein.	0.604
GCA_000517105_00309	GCA_000517105_03313	Unannotated protein.	Unannotated protein.	0.768
GCA_000517105_00309	GCA_000517105_03472	Unannotated protein.	Unannotated protein.	0.634
GCA_000517105_00309	GCA_000517105_03641	Unannotated protein.	Unannotated protein.	0.778
GCA_000517105_00309	GCA_000517105_03734	Unannotated protein.	Unannotated protein.	0.753
GCA_000517105_00309	GCA_000517105_03844	Unannotated protein.	Unannotated protein.	0.891
GCA_000517105_00309	GCA_000517105_06874	Unannotated protein.	Unannotated protein.	0.915
GCA_000517105_00822	GCA_000517105_01129	Unannotated protein.	Unannotated protein.	0.703