(24 nodes) Butanoate metabolism network (Fischerella sp. PCC9605)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000517105_01831	Unannotated protein. (240 aa)
	GCA_000517105_01832	Unannotated protein. (346 aa)
	GCA_000517105_01833	Unannotated protein. (365 aa)
	GCA_000517105_01007	Unannotated protein. (455 aa)
	GCA_000517105_01840	Unannotated protein. (351 aa)
	GCA_000517105_01006	Unannotated protein. (547 aa)
	GCA_000517105_01843	Unannotated protein. (240 aa)
	GCA_000517105_00929	Unannotated protein. (472 aa)
	GCA_000517105_04762	Unannotated protein. (871 aa)
	GCA_000517105_04512	Unannotated protein. (630 aa)
	GCA_000517105_04468	Unannotated protein. (301 aa)
	GCA_000517105_03647	Unannotated protein. (1246 aa)
	GCA_000517105_03363	Unannotated protein. (574 aa)
	GCA_000517105_02176	Unannotated protein. (334 aa)
	GCA_000517105_01988	Unannotated protein. (677 aa)
	GCA_000517105_01264	Unannotated protein. (260 aa)
	GCA_000517105_01265	Unannotated protein. (728 aa)
	GCA_000517105_01311	Unannotated protein. (252 aa)
	GCA_000517105_01404	Unannotated protein. (606 aa)
	GCA_000517105_00479	Unannotated protein. (575 aa)
	GCA_000517105_06385	Unannotated protein. (284 aa)
	GCA_000517105_06586	Unannotated protein. (1265 aa)
	GCA_000517105_06085	Unannotated protein. (629 aa)
	GCA_000517105_01427	Unannotated protein. (172 aa)

Your Current Organism:

Fischerella sp. PCC9605

NCBI taxonomy Id: 1173024
Other names: F. sp. PCC 9605, Fischerella sp. PCC 9605

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000517105_00479	GCA_000517105_00929	Unannotated protein.	Unannotated protein.	0.819
GCA_000517105_00479	GCA_000517105_01007	Unannotated protein.	Unannotated protein.	0.875
GCA_000517105_00479	GCA_000517105_02176	Unannotated protein.	Unannotated protein.	0.999
GCA_000517105_00479	GCA_000517105_03647	Unannotated protein.	Unannotated protein.	0.986
GCA_000517105_00479	GCA_000517105_04468	Unannotated protein.	Unannotated protein.	0.897
GCA_000517105_00479	GCA_000517105_04762	Unannotated protein.	Unannotated protein.	0.509
GCA_000517105_00479	GCA_000517105_06586	Unannotated protein.	Unannotated protein.	0.986
GCA_000517105_00929	GCA_000517105_00479	Unannotated protein.	Unannotated protein.	0.819
GCA_000517105_00929	GCA_000517105_01007	Unannotated protein.	Unannotated protein.	0.807
GCA_000517105_00929	GCA_000517105_01404	Unannotated protein.	Unannotated protein.	0.520
GCA_000517105_00929	GCA_000517105_01427	Unannotated protein.	Unannotated protein.	0.413
GCA_000517105_00929	GCA_000517105_01988	Unannotated protein.	Unannotated protein.	0.520
GCA_000517105_00929	GCA_000517105_02176	Unannotated protein.	Unannotated protein.	0.680
GCA_000517105_00929	GCA_000517105_03647	Unannotated protein.	Unannotated protein.	0.911
GCA_000517105_00929	GCA_000517105_04468	Unannotated protein.	Unannotated protein.	0.623
GCA_000517105_00929	GCA_000517105_04762	Unannotated protein.	Unannotated protein.	0.823
GCA_000517105_00929	GCA_000517105_06385	Unannotated protein.	Unannotated protein.	0.489
GCA_000517105_00929	GCA_000517105_06586	Unannotated protein.	Unannotated protein.	0.911
GCA_000517105_01006	GCA_000517105_01007	Unannotated protein.	Unannotated protein.	0.782
GCA_000517105_01006	GCA_000517105_01311	Unannotated protein.	Unannotated protein.	0.962