(38 nodes) Carotenoid biosynthesis network (Fischerella sp. PCC9605)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000517105_01610	Unannotated protein. (565 aa)
	GCA_000517105_01730	Unannotated protein. (504 aa)
	GCA_000517105_01750	Unannotated protein. (411 aa)
	GCA_000517105_01787	Unannotated protein. (420 aa)
	GCA_000517105_03321	Unannotated protein. (479 aa)
	GCA_000517105_03054	Unannotated protein. (335 aa)
	GCA_000517105_03053	Unannotated protein. (31 aa)
	GCA_000517105_02373	Unannotated protein. (505 aa)
	GCA_000517105_02326	Unannotated protein. (407 aa)
	GCA_000517105_02318	Unannotated protein. (99 aa)
	GCA_000517105_01937	Unannotated protein. (286 aa)
	GCA_000517105_02101	Unannotated protein. (487 aa)
	GCA_000517105_02223	Unannotated protein. (83 aa)
	GCA_000517105_03905	Unannotated protein. (564 aa)
	GCA_000517105_03893	Unannotated protein. (426 aa)
	GCA_000517105_03322	Unannotated protein. (310 aa)
	GCA_000517105_05167	Unannotated protein. (305 aa)
	GCA_000517105_05157	Unannotated protein. (140 aa)
	GCA_000517105_05156	Unannotated protein. (349 aa)
	GCA_000517105_05121	Unannotated protein. (504 aa)
	GCA_000517105_05069	Unannotated protein. (396 aa)
	GCA_000517105_04992	Unannotated protein. (301 aa)
	GCA_000517105_04594	Unannotated protein. (419 aa)
	GCA_000517105_04323	Unannotated protein. (378 aa)
	GCA_000517105_07055	Unannotated protein. (155 aa)
	GCA_000517105_07054	Unannotated protein. (183 aa)
	GCA_000517105_06699	Unannotated protein. (503 aa)
	GCA_000517105_06046	Unannotated protein. (125 aa)
	GCA_000517105_05704	Unannotated protein. (398 aa)
	GCA_000517105_05395	Unannotated protein. (261 aa)
	GCA_000517105_05331	Unannotated protein. (515 aa)
	GCA_000517105_05296	Unannotated protein. (233 aa)
	GCA_000517105_05246	Unannotated protein. (420 aa)
	GCA_000517105_00107	Unannotated protein. (708 aa)
	GCA_000517105_00117	Unannotated protein. (238 aa)
	GCA_000517105_00145	Unannotated protein. (109 aa)
	GCA_000517105_00146	Unannotated protein. (266 aa)
	GCA_000517105_00626	Unannotated protein. (419 aa)

Your Current Organism:

Fischerella sp. PCC9605

NCBI taxonomy Id: 1173024
Other names: F. sp. PCC 9605, Fischerella sp. PCC 9605

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000517105_00107	GCA_000517105_01610	Unannotated protein.	Unannotated protein.	0.819
GCA_000517105_00107	GCA_000517105_01730	Unannotated protein.	Unannotated protein.	0.488
GCA_000517105_00107	GCA_000517105_02101	Unannotated protein.	Unannotated protein.	0.832
GCA_000517105_00107	GCA_000517105_02373	Unannotated protein.	Unannotated protein.	0.831
GCA_000517105_00107	GCA_000517105_03321	Unannotated protein.	Unannotated protein.	0.481
GCA_000517105_00107	GCA_000517105_03322	Unannotated protein.	Unannotated protein.	0.603
GCA_000517105_00107	GCA_000517105_03905	Unannotated protein.	Unannotated protein.	0.705
GCA_000517105_00107	GCA_000517105_04992	Unannotated protein.	Unannotated protein.	0.615
GCA_000517105_00107	GCA_000517105_05121	Unannotated protein.	Unannotated protein.	0.668
GCA_000517105_00107	GCA_000517105_05167	Unannotated protein.	Unannotated protein.	0.737
GCA_000517105_00107	GCA_000517105_05331	Unannotated protein.	Unannotated protein.	0.696
GCA_000517105_00107	GCA_000517105_05395	Unannotated protein.	Unannotated protein.	0.625
GCA_000517105_00107	GCA_000517105_06699	Unannotated protein.	Unannotated protein.	0.545
GCA_000517105_00117	GCA_000517105_02101	Unannotated protein.	Unannotated protein.	0.770
GCA_000517105_00117	GCA_000517105_02373	Unannotated protein.	Unannotated protein.	0.530
GCA_000517105_00117	GCA_000517105_03321	Unannotated protein.	Unannotated protein.	0.766
GCA_000517105_00145	GCA_000517105_00146	Unannotated protein.	Unannotated protein.	0.876
GCA_000517105_00145	GCA_000517105_00626	Unannotated protein.	Unannotated protein.	0.649
GCA_000517105_00145	GCA_000517105_01750	Unannotated protein.	Unannotated protein.	0.460
GCA_000517105_00145	GCA_000517105_01937	Unannotated protein.	Unannotated protein.	0.482