STRINGSTRING
AFY67463.1 AFY67463.1 psbL psbL psb28 psb28 psbF psbF thf1 thf1 psbJ psbJ psbZ psbZ AFY65132.1 AFY65132.1 psbT psbT AFY65726.1 AFY65726.1 psbI psbI psbK psbK
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AFY67463.1PFAM: Domain of unknown function (DUF477); COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: ana:alr4100 hypothetical protein; PFAM: protein of unknown function DUF477; SPTR: Alr4100 protein. (244 aa)
psbLPhotosystem II protein PsbL; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization. (40 aa)
psb28PFAM: Psb28 protein; TIGRFAM: photosystem II reaction center protein Psb28; InterPro IPR005610; KEGG: syf:Synpcc7942_1679 photosystem II reaction center protein Psb28; PFAM: photosystem II protein PsbW class I; SPTR: Photosystem II reaction center Psb28 protein; TIGRFAM: photosystem II reaction center protein Psb28; Belongs to the Psb28 family. (111 aa)
psbFCytochrome b559, beta subunit; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family. (44 aa)
thf1Photosystem II biogenesis protein Psp29; May be involved in photosynthetic membrane biogenesis. (239 aa)
psbJPhotosystem II protein PsbJ; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (39 aa)
psbZPhotosystem II core protein PsbZ; Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna; Belongs to the PsbZ family. (63 aa)
AFY65132.1PFAM: S4 domain; TIGRFAM: photosystem II S4 domain protein; COGs: COG2302 conserved hypothetical protein contains S4-like domain; InterPro IPR017506:IPR002942; KEGG: ava:Ava_1012 RNA-binding S4; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: RNA-binding S4; TIGRFAM: photosystem II S4 domain protein. (259 aa)
psbTPhotosystem II protein PsbT; Seems to play a role in the dimerization of PSII. Belongs to the PsbT family. (32 aa)
AFY65726.1TIGRFAM: photosystem II protein PsbQ; InterPro IPR017487; KEGG: ava:Ava_5036 hypothetical protein; SPTR: Photosystem II extrinsic protein PsbQ; TIGRFAM: photosystem II protein PsbQ. (147 aa)
psbIPhotosystem II protein PsbI; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (38 aa)
psbKPhotosystem II protein PsbK; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (45 aa)
Your Current Organism:
Geitlerinema sp. PCC7407
NCBI taxonomy Id: 1173025
Other names: G. sp. PCC 7407, Geitlerinema sp. ATCC 29126, Geitlerinema sp. CPCC 99, Geitlerinema sp. PCC 7407
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