Your Input: | |
| | murI | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. (281 aa) |
| | AFZ29442.1 | PFAM: Iron-Sulfur binding protein C terminal; COGs: COG1142 Fe-S-cluster-containing hydrogenase components 2; KEGG: ava:Ava_0125 4Fe-4S ferredoxin, iron-sulfur binding; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding. (386 aa) |
| | lysS | PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase, class II; InterPro IPR002313:IPR004365:IPR004364; KEGG: ava:Ava_3150 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. (575 aa) |
| | hisS | PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase; COGs: COG0124 Histidyl-tRNA synthetase; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR015807:IPR002314:IPR004154; KEGG: cyc:PCC7424_5012 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup. (426 aa) |
| | prfA | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (366 aa) |
| | rpmE | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (79 aa) |
| | rpsI | PFAM: Ribosomal protein S9/S16; COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: ava:Ava_0719 30S ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (138 aa) |
| | rplM | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (151 aa) |
| | rplQ | PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17; COGs: COG0203 Ribosomal protein L17; HAMAP: Ribosomal protein L17; InterPro IPR000456; KEGG: ava:Ava_0716 50S ribosomal protein L17; PFAM: Ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17. (116 aa) |
| | rpsK | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (130 aa) |
| | rplN | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsM | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (126 aa) |
| | rpmJ | PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; HAMAP: Ribosomal protein L36; InterPro IPR000473; KEGG: naz:Aazo_2580 50S ribosomal protein L36; PFAM: Ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: Ribosomal protein L36; manually curated; Belongs to the bacterial ribosomal protein bL36 family. (37 aa) |
| | infA | Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (74 aa) |
| | rplD | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (210 aa) |
| | rplO | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (150 aa) |
| | rplW | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (104 aa) |
| | rplB | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (287 aa) |
| | rpsS | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplV | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (122 aa) |
| | rpsC | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (249 aa) |
| | rplP | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (139 aa) |
| | rpmC | PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; InterPro IPR001854; KEGG: ava:Ava_0699 50S ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (76 aa) |
| | rpsQ | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (83 aa) |
| | rpsE | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (175 aa) |
| | rplR | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (120 aa) |
| | rplF | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (179 aa) |
| | rpsH | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (133 aa) |
| | rplE | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (181 aa) |
| | rplX | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (118 aa) |
| | mraY | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (364 aa) |
| | cysS | PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803:IPR015273:IPR002308; KEGG: npu:Npun_F3946 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family. (490 aa) |
| | ileS | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (1093 aa) |
| | AFZ28792.1 | KEGG: ana:alr2775 hypothetical protein; SPTR: Alr2775 protein. (209 aa) |
| | AFZ28805.1 | Glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: npu:Npun_R2710 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 39; SPTR: Glycosyl transferase, family 39. (546 aa) |
| | AFZ28999.1 | Glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; COGs: COG1928 Dolichyl-phosphate-mannose--protein O-mannosyl transferase; InterPro IPR003342; KEGG: npu:Npun_F0019 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 39; SPTR: Glycosyl transferase family protein. (487 aa) |
| | AFZ29043.1 | PFAM: S1 RNA binding domain; COGs: COG0539 Ribosomal protein S1; InterPro IPR003029; KEGG: npu:Npun_F0856 RNA-binding S1 domain-containing protein; PFAM: Ribosomal protein S1, RNA binding domain; SPTR: RNA binding S1 domain protein; manually curated. (299 aa) |
| | def-2 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (177 aa) |
| | AFZ33238.1 | COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; KEGG: cyn:Cyan7425_2677 hypothetical protein; SPTR: Putative uncharacterized protein. (474 aa) |
| | AFZ33237.1 | KEGG: cyn:Cyan7425_2676 hypothetical protein; SPTR: Putative uncharacterized protein. (414 aa) |
| | AFZ33232.1 | Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: ana:alr3065 hypothetical protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein. (422 aa) |
| | AFZ33126.1 | TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain; COGs: COG0481 Membrane GTPase LepA; HAMAP: GTP-binding protein LepA; InterProIPR006297:IPR000795:IPR004161:IPR000640:IPR 013842:IPR005225; KEGG: naz:Aazo_3444 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein. (603 aa) |
| | leuS | TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR015413:IPR013155:IPR002302; KEGG: ana:alr3283 leucyl-tRNA synthetase; PFAM: Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Aminoacyl-tRNA synthetase, class I (M); SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial. (849 aa) |
| | AFZ33052.1 | PFAM: Amidase; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120; KEGG: npu:Npun_R4994 amidase; PFAM: Amidase; SPTR: Amidase; Belongs to the amidase family. (465 aa) |
| | AFZ32994.1 | Ras superfamily GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (287 aa) |
| | AFZ32838.1 | Virulence factor MVIN family protein; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN; COGs: COG0728 membrane protein putative virulence factor; InterPro IPR004268; KEGG: npu:Npun_F1368 virulence factor MviN family protein; PFAM: Flagellin assembly, membrane protein MviN; SPTR: Virulence factor MVIN family protein. (453 aa) |
| | AFZ32832.1 | Hypothetical protein; PFAM: FemAB family; KEGG: npu:Npun_F2450 hypothetical protein; SPTR: Putative uncharacterized protein. (371 aa) |
| | AFZ32827.1 | Capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR003856:IPR005702; KEGG: npu:Npun_F1381 lipopolysaccharide biosynthesis protein; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Lipopolysaccharide biosynthesis protein; TIGRFAM: Exopolysaccharide synthesis protein. (728 aa) |
| | AFZ32822.1 | COGs: COG5305 membrane protein; KEGG: ter:Tery_2634 hypothetical protein; SPTR: Putative uncharacterized protein. (536 aa) |
| | AFZ32813.1 | PFAM: Domain of unknown function (DUF1957); Glycosyl hydrolase family 57; COGs: COG1543 conserved hypothetical protein; InterPro IPR004300:IPR015293; KEGG: ava:Ava_0382 glycoside hydrolase family protein; PFAM: Domain of unknown function DUF1957; Glycoside hydrolase, family 57, core; SPTR: Glycoside hydrolase, family 57. (529 aa) |
| | AFZ32811.1 | Hypothetical protein; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: ter:Tery_2637 hypothetical protein; SPTR: Putative uncharacterized protein. (513 aa) |
| | argS | arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase; COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR005148:IPR015945:IPR008909:IPR001278; KEGG: npu:Npun_R4006 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; DALR anticodon binding; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic. (585 aa) |
| | gatB | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (494 aa) |
| | glyQ | PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit; COGs: COG0752 Glycyl-tRNA synthetase alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; InterPro IPR002310; KEGG: ana:all1985 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit. (297 aa) |
| | AFZ32697.1 | PFAM: RF-1 domain; COGs: COG1186 Protein chain release factor B; InterPro IPR000352; KEGG: npu:Npun_R6353 peptidyl-tRNA hydrolase domain protein; PFAM: Class I peptide chain release factor; SPTR: Class I peptide chain release factor. (137 aa) |
| | AFZ32680.1 | PFAM: Amidase; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120; KEGG: rxy:Rxyl_0238 amidase; PFAM: Amidase; SPTR: Amidase; Belongs to the amidase family. (466 aa) |
| | AFZ32668.1 | 30S ribosomal protein 3; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family. (99 aa) |
| | AFZ32610.1 | PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylylransferase, long form; COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005908; KEGG: ava:Ava_3356 glucose-1-phosphate thymidylyltransferase, short form; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, short form. (358 aa) |
| | AFZ32609.1 | PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; KEGG: cyc:PCC7424_0018 glycosyl transferase; SPTR: Predicted glycosyltransferase. (287 aa) |
| | AFZ32608.1 | PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: naz:Aazo_5204 group 1 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1. (358 aa) |
| | glmU | Bifunctional protein glmU; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. (459 aa) |
| | AFZ32565.1 | Export-related chaperone CsaA; PFAM: Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; export-related chaperone CsaA; COGs: COG0073 EMAP domain; InterPro IPR002547:IPR008231; KEGG: npu:Npun_R0138 export-related chaperone CsaA; PFAM: tRNA-binding domain; SPTR: EMAP domain protein; TIGRFAM: Secretion chaperone CsaA. (110 aa) |
| | AFZ32504.1 | PFAM: Alpha amylase, catalytic domain; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR006589:IPR006047; KEGG: mac:MA3032 alpha-amylase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Alpha-amylase. (622 aa) |
| | AFZ32441.1 | PFAM: Glycosyltransferase family 9 (heptosyltransferase); COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: cyn:Cyan7425_3214 glycosyl transferase family 9; PFAM: Glycosyl transferase, family 9; SPTR: Glycosyl transferase family 9. (677 aa) |
| | AFZ32437.1 | PFAM: Glycosyltransferase family 9 (heptosyltransferase); COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: cyn:Cyan7425_0950 glycosyl transferase family 9; PFAM: Glycosyl transferase, family 9; SPTR: Glycosyl transferase family 9. (339 aa) |
| | AFZ32436.1 | KEGG: ttr:Tter_0148 glycosyl transferase family 9; SPTR: Glycosyl transferase family 9. (151 aa) |
| | AFZ32430.1 | PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II; COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: cyn:Cyan7425_3731 lipopolysaccharide heptosyltransferase II; PFAM: Glycosyl transferase, family 9; SPTR: Lipopolysaccharide heptosyltransferase II. (367 aa) |
| | AFZ32401.1 | KEGG: npu:Npun_R2849 hypothetical protein; SPTR: Putative uncharacterized protein. (148 aa) |
| | AFZ32398.1 | KEGG: cyc:PCC7424_2216 hypothetical protein; SPTR: Putative uncharacterized protein. (383 aa) |
| | AFZ32385.1 | Glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: ter:Tery_3937 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase. (818 aa) |
| | ddl | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (370 aa) |
| | uppP | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (319 aa) |
| | alaS | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (879 aa) |
| | infC | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. (175 aa) |
| | rpsJ | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (105 aa) |
| | tuf | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (409 aa) |
| | fusA | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] (691 aa) |
| | rpsG | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsL | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (123 aa) |
| | AFZ32197.1 | Capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702:IPR003856; KEGG: mar:MAE_32940 protein-tyrosine kinase; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Capsular exopolysaccharide family protein; TIGRFAM: Exopolysaccharide synthesis protein. (750 aa) |
| | AFZ32186.1 | PFAM: Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: npu:Npun_R1494 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Probable polysaccharide biosynthesis protein. (442 aa) |
| | AFZ32178.1 | PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; KEGG: dal:Dalk_5115 hypothetical protein; SPTR: Putative uncharacterized protein. (587 aa) |
| | AFZ32166.1 | Capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; InterPro IPR005702:IPR003856:IPR019591; KEGG: ana:all4432 hypothetical protein; PFAM: ATPase-like, ParA/MinD; Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: All4432 protein; TIGRFAM: Exopolysaccharide synthesis protein. (731 aa) |
| | AFZ32156.1 | PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_6299 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Probable glycosyl transferase. (375 aa) |
| | AFZ32149.1 | PFAM: Domain of unknown function (DUF1727); Mur ligase middle domain; COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR013221:IPR013564; KEGG: ana:alr2717 hypothetical protein; PFAM: Domain of unknown function DUF1727; Mur ligase, central; SPTR: Alr2717 protein. (456 aa) |
| | AFZ32148.1 | PFAM: CobB/CobQ-like glutamine amidotransferase domain; COGs: COG3442 glutamine amidotransferase; InterPro IPR011698; KEGG: ava:Ava_4286 CobB/CobQ-like glutamine amidotransferase; PFAM: CobB/CobQ-like glutamine amidotransferase; SPTR: CobB/CobQ-like glutamine amidotransferase. (267 aa) |
| | gatA | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (483 aa) |
| | AFZ32090.1 | COGs: COG5305 membrane protein; KEGG: ava:Ava_0779 hypothetical protein; SPTR: Putative uncharacterized protein. (610 aa) |
| | murB | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. (339 aa) |
| | murC | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (506 aa) |
| | smpB | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (166 aa) |
| | AFZ32055.1 | Inorganic carbon transporter; PFAM: O-Antigen ligase; TIGRFAM: putative bicarbonate transporter, IctB family; COGs: COG3307 Lipid A core - O-antigen ligase; InterPro IPR006007:IPR007016; KEGG: npu:Npun_R0453 O-antigen polymerase; PFAM: O-antigen ligase-related; SPTR: O-antigen polymerase; TIGRFAM: Inorganic carbon transporter. (470 aa) |
| | rpsT | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. (101 aa) |
| | murA | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (458 aa) |
| | metG | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. (532 aa) |
| | def | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (187 aa) |
| | rpsN | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (100 aa) |
| | serS | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (430 aa) |
| | AFZ31759.1 | PFAM: Amidase; TIGRFAM: amidohydrolase, AtzE family; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120:IPR014087; KEGG: npu:Npun_F2490 amidase; PFAM: Amidase; SPTR: Amidase; TIGRFAM: Amidohydrolase, AtzE type. (456 aa) |
| | rodA | Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. (417 aa) |
| | fmt | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (336 aa) |
| | AFZ31694.1 | Glycosyl transferase, family 4, conserved region-containing protein; PFAM: Glycosyl transferase family 4; COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: naz:Aazo_3206 family 4 glycosyl transferase; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Glycosyl transferase, group 4 family protein. (359 aa) |
| | rplY | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (223 aa) |
| | rplI | LSU ribosomal protein L9P; Binds to the 23S rRNA. (152 aa) |
| | rpmH | PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; HAMAP: 50S ribosomal protein L34; InterPro IPR000271; KEGG: npu:Npun_R1588 50S ribosomal protein L34; PFAM: Ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | AFZ31490.1 | PFAM: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR004379:IPR006076:IPR015899; KEGG: npu:Npun_F0220 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal; FAD dependent oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase. (808 aa) |
| | AFZ31487.1 | KEGG: ana:all3398 hypothetical protein; SPTR: All3398 protein. (388 aa) |
| | AFZ31433.1 | Glycosyl transferase, family 4, conserved region-containing protein; PFAM: Glycosyl transferase family 4; COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: ana:alr4807 hypothetical protein; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Alr4807 protein. (347 aa) |
| | rpsF | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. (112 aa) |
| | AFZ31423.1 | PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: ava:Ava_2064 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2. (316 aa) |
| | rpsB | PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; COGs: COG0052 Ribosomal protein S2; InterPro IPR005706:IPR001865; KEGG: ava:Ava_2061 30S ribosomal protein S2; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; Belongs to the universal ribosomal protein uS2 family. (271 aa) |
| | tsf | Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (219 aa) |
| | glgB | 1,4-alpha-glucan-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (763 aa) |
| | rpmB | PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; COGs: COG0227 Ribosomal protein L28; HAMAP: Ribosomal protein L28; InterPro IPR001383; KEGG: cyt:cce_0136 50S ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | AFZ31384.1 | PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cyc:PCC7424_0330 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase family 2. (345 aa) |
| | AFZ31383.1 | PFAM: Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: ana:alr3072 hypothetical protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Alr3072 protein. (430 aa) |
| | AFZ31381.1 | KEGG: ana:alr2296 hypothetical protein; SPTR: Putative uncharacterized protein. (432 aa) |
| | AFZ31379.1 | COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; KEGG: cyn:Cyan7425_2677 hypothetical protein; SPTR: Putative uncharacterized protein. (488 aa) |
| | murE | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (506 aa) |
| | valS | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (911 aa) |
| | AFZ31320.1 | KEGG: ana:alr4119 hypothetical protein; SPTR: Alr4119 protein. (146 aa) |
| | rplU | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (132 aa) |
| | rpmA | PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; COGs: COG0211 Ribosomal protein L27; HAMAP: Ribosomal protein L27; InterPro IPR001684; KEGG: naz:Aazo_0424 50S ribosomal protein L27; PFAM: Ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (96 aa) |
| | AFZ31277.1 | PFAM: Protein of unknown function (DUF790); COGs: COG3372 conserved hypothetical protein; InterPro IPR008508; KEGG: ana:all2950 hypothetical protein; PFAM: Protein of unknown function DUF790, endonuclease-like; SPTR: All2950 protein. (403 aa) |
| | rpsR | SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (71 aa) |
| | rpmG | PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: naz:Aazo_5172 50S ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; manually curated; Belongs to the bacterial ribosomal protein bL33 family. (64 aa) |
| | pheT | phenylalanyl-tRNA synthetase beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR004532:IPR002547:IPR005146:IPR005147:IPR 005121; KEGG: npu:Npun_F1087 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding domain; tRNA synthetase, B5; Phenylalanyl-tRNA synth [...] (814 aa) |
| | AFZ31242.1 | PFAM: Glycosyltransferase family 9 (heptosyltransferase); COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: ava:Ava_2415 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 9; SPTR: Glycosyl transferase, family 9. (314 aa) |
| | frr | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. (182 aa) |
| | AFZ31213.1 | PFAM: O-Antigen ligase; InterPro IPR007016; KEGG: ava:Ava_3597 O-antigen polymerase; PFAM: O-antigen ligase-related; SPTR: O-antigen polymerase. (440 aa) |
| | glgC | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (429 aa) |
| | AFZ31104.1 | Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR017790:IPR005311:IPR001460; KEGG: npu:Npun_F4453 penicillin-binding protein, transpeptidase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding Protein dimerisation domain family; TIGRFAM: Penicillin-binding protein 2. (588 aa) |
| | AFZ31075.1 | PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA); COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616:IPR008532; KEGG: ava:Ava_3303 hypothetical protein; PFAM: Fibronectin-binding A, N-terminal; Protein of unknown function DUF814; SPTR: Putative uncharacterized protein; manually curated. (584 aa) |
| | prfC | Bacterial peptide chain release factor 3 (bRF-3); Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (543 aa) |
| | AFZ31029.1 | Glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: npu:Npun_R2890 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 39; SPTR: Glycosyl transferase, family 39. (596 aa) |
| | AFZ31004.1 | TIGRFAM: parallel beta-helix repeat (two copies); InterPro IPR006626; KEGG: sen:SACE_3182 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: parallel beta-helix repeat. (563 aa) |
| | AFZ31003.1 | TIGRFAM: parallel beta-helix repeat (two copies); InterPro IPR006626; KEGG: sen:SACE_3182 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: parallel beta-helix repeat. (565 aa) |
| | AFZ31002.1 | Putative sortase-sorted surface protein; TIGRFAM: parallel beta-helix repeat (two copies); InterPro IPR006626; KEGG: cms:CMS_0079 putative sortase-sorted surface protein; SPTR: Putative sortase-sorted surface protein. (574 aa) |
| | AFZ30998.1 | PFAM: O-Antigen ligase; COGs: COG3307 Lipid A core - O-antigen ligase; InterPro IPR007016; KEGG: cyn:Cyan7425_1130 O-antigen polymerase; PFAM: O-antigen ligase-related; SPTR: O-antigen polymerase. (428 aa) |
| | AFZ30992.1 | Capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; InterPro IPR003856:IPR005702; KEGG: npu:Npun_F5505 fis family transcriptional regulator; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Transcriptional regulator, Fis family; TIGRFAM: Exopolysaccharide synthesis protein. (733 aa) |
| | tyrS | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. (439 aa) |
| | rpsU-3 | PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: naz:Aazo_1918 30S ribosomal protein S21; PFAM: Ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (59 aa) |
| | pth | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (212 aa) |
| | gltX | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (482 aa) |
| | AFZ30747.1 | PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: gvi:glr1066 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glr1066 protein. (335 aa) |
| | AFZ30605.1 | SSU ribosomal protein S1P; PFAM: S1 RNA binding domain; COGs: COG0539 Ribosomal protein S1; InterPro IPR003029; KEGG: ana:all0136 30S ribosomal protein S1; PFAM: Ribosomal protein S1, RNA binding domain; SPTR: 30S ribosomal protein S1. (330 aa) |
| | rplT | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (117 aa) |
| | rpsU-2 | PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: naz:Aazo_4662 30S ribosomal protein S21; PFAM: Ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (63 aa) |
| | AFZ30487.1 | ErfK/YbiS/YcfS/YnhG family protein; PFAM: L,D-transpeptidase catalytic domain; COGs: COG1376 conserved hypothetical protein; InterPro IPR005490; KEGG: cyn:Cyan7425_4888 ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; SPTR: ErfK/YbiS/YcfS/YnhG family protein. (183 aa) |
| | murJ | Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (530 aa) |
| | rpsP | PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: naz:Aazo_1143 30S ribosomal protein S16; PFAM: Ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (86 aa) |
| | AFZ30360.1 | COGs: COG1837 RNA-binding protein (contains KH domain); KEGG: npu:Npun_F2859 hypothetical protein; SPTR: Putative uncharacterized protein. (135 aa) |
| | AFZ30248.1 | PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, putative, prokaryotic; COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950; KEGG: ava:Ava_1910 translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; SPTR: Translation initiation factor 1 (EIF-1/SUI1). (115 aa) |
| | AFZ30246.1 | COGs: COG5305 membrane protein; KEGG: ava:Ava_0779 hypothetical protein; SPTR: Putative uncharacterized protein. (557 aa) |
| | lgt | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. (285 aa) |
| | glyS | PFAM: Glycyl-tRNA synthetase beta subunit; DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit; COGs: COG0751 Glycyl-tRNA synthetase beta subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, beta subunit; InterPro IPR015944:IPR002311; KEGG: ava:Ava_0794 glycyl-tRNA synthetase subunit beta; PFAM: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase beta subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit. (715 aa) |
| | aspS | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (595 aa) |
| | AFZ30159.1 | COGs: COG5305 membrane protein; KEGG: naz:Aazo_4315 hypothetical protein; SPTR: Putative uncharacterized protein. (549 aa) |
| | AFZ30120.1 | Parallel beta-helix repeat protein; PFAM: Protein of unknown function (DUF1565); S-layer homology domain; TIGRFAM: parallel beta-helix repeat (two copies); InterPro IPR006626:IPR011459:IPR001119; KEGG: ana:alr3608 hypothetical protein; PFAM: Protein of unknown function DUF1565; S-layer homology domain; SMART: Parallel beta-helix repeat; SPTR: Alr3608 protein; TIGRFAM: parallel beta-helix repeat. (611 aa) |
| | infB | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (1014 aa) |
| | AFZ30077.1 | TIGRFAM: TIGR03032 family protein; InterPro IPR017481; KEGG: npu:Npun_F1456 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03032. (353 aa) |
| | rpsO | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | AFZ30016.1 | Cyanophycin synthase (L-aspartate-adding); PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; TIGRFAM: cyanophycin synthetase; COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR013651; KEGG: npu:Npun_R1819 RimK domain-containing protein ATP-grasp; PFAM: ATP-grasp fold, RimK-type; PRIAM: Cyanophycin synthase (L-aspartate-adding); SPTR: RimK domain protein ATP-grasp. (636 aa) |
| | AFZ30015.1 | 1,4-alpha-glucan branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR006589:IPR004193:IPR006047:IPR006048; KEGG: npu:Npun_R1027 alpha amylase, catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Glycoside hydrolase, family 13, N-terminal; Alpha-amylase, C-terminal all beta; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Malto-oli [...] (551 aa) |
| | AFZ29994.1 | O-antigen polymerase; InterPro IPR007016; KEGG: ana:alr2296 hypothetical protein; PFAM: O-antigen ligase-related; SPTR: Putative uncharacterized protein. (422 aa) |
| | AFZ29993.1 | COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; KEGG: cyc:PCC7424_4595 hypothetical protein; SPTR: Putative uncharacterized protein. (462 aa) |
| | AFZ29984.1 | PFAM: Glycosyltransferase family 28 C-terminal domain; COGs: COG5017 conserved hypothetical protein; InterPro IPR007235; KEGG: cyc:PCC7424_4577 glycosyltransferase 28 domain protein; PFAM: Glycosyl transferase, family 28, C-terminal; SPTR: Glycosyltransferase 28 domain protein. (154 aa) |
| | AFZ29983.1 | PFAM: Oligosaccharide biosynthesis protein Alg14 like; COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR013969; KEGG: cyn:Cyan7425_2689 oligosaccharide biosynthesis protein Alg14 like protein; PFAM: Oligosaccharide biosynthesis protein Alg14 like; SPTR: Oligosaccharide biosynthesis protein Alg14 like protein. (147 aa) |
| | murG | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (354 aa) |
| | AFZ29902.1 | PFAM: Glycosyl transferase family 8; InterPro IPR002495; KEGG: syf:Synpcc7942_2294 hypothetical protein; PFAM: Glycosyl transferase, family 8; SPTR: Putative uncharacterized protein. (290 aa) |
| | AFZ29892.1 | PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cyc:PCC7424_4197 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Putative uncharacterized protein. (352 aa) |
| | AFZ29885.1 | PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cag:Cagg_1552 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Putative uncharacterized protein. (287 aa) |
| | AFZ29881.1 | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA; COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023:IPR006549:IPR005834; KEGG: amr:AM1_2196 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, putative; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: 3-deoxy-manno-octulosonate-8-phosphatase; SPTR: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, putative; TIGRFAM: Phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA. (168 aa) |
| | kdsA | 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; InterPro IPR006269:IPR006218; KEGG: amr:AM1_2195 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase. (278 aa) |
| | kdsB | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (244 aa) |
| | AFZ29863.1 | PFAM: Glycosyltransferase family 28 C-terminal domain; COGs: COG5017 conserved hypothetical protein; InterPro IPR007235; KEGG: cyn:Cyan7425_5182 glycosyltransferase 28 domain protein; PFAM: Glycosyl transferase, family 28, C-terminal; SPTR: Glycosyltransferase 28 domain protein. (166 aa) |
| | AFZ29862.1 | PFAM: Oligosaccharide biosynthesis protein Alg14 like; InterPro IPR013969; KEGG: gvi:gll3712 glucosyltransferase EpsE-like protein; PFAM: Oligosaccharide biosynthesis protein Alg14 like; SPTR: Gll3712 protein. (149 aa) |
| | AFZ29859.1 | KEGG: cyn:Cyan7425_5175 O-antigen polymerase; SPTR: O-antigen polymerase. (453 aa) |
| | AFZ29846.1 | PFAM: AIG2-like family; InterPro IPR009288; KEGG: gob:Gobs_2844 hypothetical protein; PFAM: AIG2-like; SPTR: Putative uncharacterized protein. (136 aa) |
| | pheS | phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; InterPro IPR004529:IPR004188:IPR002319; KEGG: npu:Npun_R0940 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: Phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: Phenylalanyl-tRNA sy [...] (333 aa) |
| | asnS | PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase; COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; HAMAP: Asparaginyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR004522; KEGG: npu:Npun_R0874 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: Asparaginyl-tRNA synthetase; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb. (462 aa) |
| | AFZ29771.1 | KEGG: llo:LLO_1865 hypothetical protein; SPTR: Putative uncharacterized protein. (214 aa) |
| | mltG | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (359 aa) |
| | lnt | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (530 aa) |
| | murF | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (450 aa) |
| | murD | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (451 aa) |
| | glgA | Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (510 aa) |
| | rplC | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (212 aa) |
| | rpmF | PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: ava:Ava_3613 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family. (58 aa) |
| | AFZ29110.1 | Hypothetical protein; KEGG: ebd:ECBD_4206 conserved hypothetical protein, hypothetical protein; SPTR: Putative uncharacterized protein. (133 aa) |
| | thrS | threonyl-tRNA synthetase; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: threonyl-tRNA synthetase; COGs: COG0441 Threonyl-tRNA synthetase; InterPro IPR002320:IPR012947:IPR002314:IPR004154; KEGG: ana:alr0335 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; Anticodon-binding; SPTR: Threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; Belongs to the class-II aminoacyl-tRN [...] (607 aa) |
| | AFZ29183.1 | PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: ana:alr5203 hypothetical protein; PFAM: Glycosyl transferase, family 2; SPTR: Alr5203 protein. (353 aa) |
| | efp | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (185 aa) |
| | proS | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] (602 aa) |
| | trpS | tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (335 aa) |
| | rpsU | PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: syp:SYNPCC7002_A1741 ribosomal protein S21; PFAM: Ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (62 aa) |
| | gatC | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (97 aa) |
| | rpsD | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (202 aa) |
| | AFZ29341.1 | PFAM: DALR anticodon binding domain; InterPro IPR008909; KEGG: ter:Tery_3617 DALR anticodon binding; PFAM: DALR anticodon binding; SPTR: DALR anticodon binding. (280 aa) |
| | AFZ29352.1 | PFAM: Protein of unknown function (DUF1565); TIGRFAM: parallel beta-helix repeat (two copies); InterPro IPR011459:IPR006633:IPR006626; KEGG: ava:Ava_5048 hypothetical protein; PFAM: Protein of unknown function DUF1565; SMART: Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat; SPTR: Putative uncharacterized protein; TIGRFAM: parallel beta-helix repeat. (575 aa) |
| | rplL | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (132 aa) |
| | rplJ | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (183 aa) |
| | rplA | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (237 aa) |
| | rplK | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa) |
| | rplS | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (120 aa) |
