STRINGSTRING
EKF75894.1 EKF75894.1 EKF75911.1 EKF75911.1 radA radA EKF75960.1 EKF75960.1 EKF76009.1 EKF76009.1 EKF76018.1 EKF76018.1 EKF76027.1 EKF76027.1 EKF76087.1 EKF76087.1 ntrC ntrC EKF76137.1 EKF76137.1 EKF76139.1 EKF76139.1 EKF75547.1 EKF75547.1 EKF75549.1 EKF75549.1 EKF75555.1 EKF75555.1 EKF75565.1 EKF75565.1 EKF75592.1 EKF75592.1 EKF75614.1 EKF75614.1 EKF75619.1 EKF75619.1 EKF75621.1 EKF75621.1 EKF75648.1 EKF75648.1 EKF75669.1 EKF75669.1 EKF75670.1 EKF75670.1 EKF75671.1 EKF75671.1 EKF75677.1 EKF75677.1 EKF75692.1 EKF75692.1 EKF75722.1 EKF75722.1 EKF75730.1 EKF75730.1 EKF75747.1 EKF75747.1 EKF75751.1 EKF75751.1 EKF75752.1 EKF75752.1 EKF75821.1 EKF75821.1 EKF75822.1 EKF75822.1 EKF75342.1 EKF75342.1 EKF75343.1 EKF75343.1 EKF75351.1 EKF75351.1 EKF75352.1 EKF75352.1 infB infB EKF75390.1 EKF75390.1 EKF75391.1 EKF75391.1 EKF75420.1 EKF75420.1 EKF75460.1 EKF75460.1 EKF75461.1 EKF75461.1 EKF75468.1 EKF75468.1 EKF75481.1 EKF75481.1 EKF75489.1 EKF75489.1 EKF75496.1 EKF75496.1 EKF75510.1 EKF75510.1 EKF75198.1 EKF75198.1 EKF75218.1 EKF75218.1 EKF75267.1 EKF75267.1 EKF75284.1 EKF75284.1 EKF75305.1 EKF75305.1 EKF75035.1 EKF75035.1 EKF75038.1 EKF75038.1 EKF75039.1 EKF75039.1 EKF75040.1 EKF75040.1 EKF75053.1 EKF75053.1 EKF75070.1 EKF75070.1 EKF75080.1 EKF75080.1 EKF75081.1 EKF75081.1 glnD glnD EKF74922.1 EKF74922.1 EKF74923.1 EKF74923.1 EKF74924.1 EKF74924.1 EKF74928.1 EKF74928.1 EKF74955.1 EKF74955.1 EKF74959.1 EKF74959.1 EKF74966.1 EKF74966.1 EKF74972.1 EKF74972.1 EKF74979.1 EKF74979.1 EKF74985.1 EKF74985.1 EKF74987.1 EKF74987.1 EKF74832.1 EKF74832.1 EKF74839.1 EKF74839.1 EKF74843.1 EKF74843.1 EKF74845.1 EKF74845.1 EKF74876.1 EKF74876.1 EKF74905.1 EKF74905.1 EKF74735.1 EKF74735.1 ompR ompR EKF74737.1 EKF74737.1 EKF74739.1 EKF74739.1 EKF74740.1 EKF74740.1 EKF74743.1 EKF74743.1 EKF74744.1 EKF74744.1 EKF74748.1 EKF74748.1 EKF74749.1 EKF74749.1 EKF74764.1 EKF74764.1 EKF74765.1 EKF74765.1 EKF74770.1 EKF74770.1 EKF74802.1 EKF74802.1 EKF74633.1 EKF74633.1 EKF74650.1 EKF74650.1 EKF74656.1 EKF74656.1 EKF74657.1 EKF74657.1 EKF74676.1 EKF74676.1 EKF74529.1 EKF74529.1 EKF74541.1 EKF74541.1 EKF74545.1 EKF74545.1 EKF74546.1 EKF74546.1 EKF74547.1 EKF74547.1 EKF74553.1 EKF74553.1 EKF74568.1 EKF74568.1 EKF74572.1 EKF74572.1 EKF74573.1 EKF74573.1 glsA glsA EKF74399.1 EKF74399.1 EKF74404.1 EKF74404.1 EKF74443.1 EKF74443.1 EKF74463.1 EKF74463.1 EKF74464.1 EKF74464.1 EKF74494.1 EKF74494.1 EKF74497.1 EKF74497.1 EKF74498.1 EKF74498.1 tsaC tsaC EKF74349.1 EKF74349.1 EKF74370.1 EKF74370.1 EKF74379.1 EKF74379.1 EKF74380.1 EKF74380.1 EKF74391.1 EKF74391.1 EKF74392.1 EKF74392.1 EKF74397.1 EKF74397.1 EKF74211.1 EKF74211.1 EKF74232.1 EKF74232.1 EKF74234.1 EKF74234.1 EKF74236.1 EKF74236.1 EKF74237.1 EKF74237.1 EKF74238.1 EKF74238.1 EKF74245.1 EKF74245.1 EKF74247.1 EKF74247.1 EKF74281.1 EKF74281.1 EKF74282.1 EKF74282.1 EKF74283.1 EKF74283.1 EKF74155.1 EKF74155.1 EKF74167.1 EKF74167.1 EKF74177.1 EKF74177.1 EKF74189.1 EKF74189.1 EKF74046.1 EKF74046.1 EKF74053.1 EKF74053.1 EKF74062.1 EKF74062.1 EKF74073.1 EKF74073.1 EKF73976.1 EKF73976.1 EKF73977.1 EKF73977.1 EKF73999.1 EKF73999.1 EKF73910.1 EKF73910.1 EKF73925.1 EKF73925.1 EKF73926.1 EKF73926.1 EKF73932.1 EKF73932.1 EKF73937.1 EKF73937.1 EKF73940.1 EKF73940.1 EKF73944.1 EKF73944.1 EKF73873.1 EKF73873.1 EKF73766.1 EKF73766.1 EKF73769.1 EKF73769.1 EKF73770.1 EKF73770.1 EKF73784.1 EKF73784.1 EKF73797.1 EKF73797.1 EKF73798.1 EKF73798.1 EKF73799.1 EKF73799.1 EKF73709.1 EKF73709.1 EKF73721.1 EKF73721.1 EKF73732.1 EKF73732.1 EKF73742.1 EKF73742.1 EKF73743.1 EKF73743.1 EKF73643.1 EKF73643.1 EKF73646.1 EKF73646.1 EKF73657.1 EKF73657.1 EKF73667.1 EKF73667.1 dnaA dnaA mnmE mnmE EKF73685.1 EKF73685.1 EKF73596.1 EKF73596.1 EKF73597.1 EKF73597.1 EKF73598.1 EKF73598.1 EKF73599.1 EKF73599.1 EKF73600.1 EKF73600.1 EKF73603.1 EKF73603.1 EKF73543.1 EKF73543.1 EKF73576.1 EKF73576.1 EKF73513.1 EKF73513.1 EKF73514.1 EKF73514.1 EKF73515.1 EKF73515.1 EKF73530.1 EKF73530.1 EKF73537.1 EKF73537.1 EKF73452.1 EKF73452.1 EKF73459.1 EKF73459.1 EKF73467.1 EKF73467.1 EKF73471.1 EKF73471.1 EKF73472.1 EKF73472.1 EKF73473.1 EKF73473.1 EKF73406.1 EKF73406.1 EKF73411.1 EKF73411.1 EKF73412.1 EKF73412.1 EKF73337.1 EKF73337.1 EKF73344.1 EKF73344.1 dusB dusB EKF73288.1 EKF73288.1 EKF73300.1 EKF73300.1 EKF73301.1 EKF73301.1 EKF73302.1 EKF73302.1 mnmG mnmG EKF73203.1 EKF73203.1 EKF73204.1 EKF73204.1 EKF73208.1 EKF73208.1 EKF73227.1 EKF73227.1 EKF73231.1 EKF73231.1 EKF73233.1 EKF73233.1 EKF73238.1 EKF73238.1 EKF73239.1 EKF73239.1 EKF73154.1 EKF73154.1 EKF73070.1 EKF73070.1 EKF73039.1 EKF73039.1 EKF73056.1 EKF73056.1 EKF73032.1 EKF73032.1 csrA csrA dusA dusA EKF73005.1 EKF73005.1 EKF72954.1 EKF72954.1 EKF72956.1 EKF72956.1 EKF72934.1 EKF72934.1 EKF72939.1 EKF72939.1 EKF72940.1 EKF72940.1 EKF72941.1 EKF72941.1 EKF72942.1 EKF72942.1 EKF72943.1 EKF72943.1 EKF72944.1 EKF72944.1 EKF72945.1 EKF72945.1 EKF72946.1 EKF72946.1 dinB dinB EKF72883.1 EKF72883.1 EKF72893.1 EKF72893.1 EKF72874.1 EKF72874.1 EKF72875.1 EKF72875.1 EKF72831.1 EKF72831.1 EKF72832.1 EKF72832.1 EKF72827.1 EKF72827.1 EKF72817.1 EKF72817.1 EKF72807.1 EKF72807.1 EKF72784.1 EKF72784.1 EKF75856.1 EKF75856.1 EKF75858.1 EKF75858.1 EKF75872.1 EKF75872.1 EKF75873.1 EKF75873.1 EKF75874.1 EKF75874.1 EKF75881.1 EKF75881.1 EKF75882.1 EKF75882.1 dusC dusC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
EKF75894.1Diguanylate cyclase; COG2199 FOG: GGDEF domain. (421 aa)
EKF75911.1COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)
radADNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (454 aa)
EKF75960.1Hypothetical protein; COG2202 FOG: PAS/PAC domain. (691 aa)
EKF76009.1FeoA family protein; COG1918 Fe2+ transport system protein A. (91 aa)
EKF76018.1COG1538 Outer membrane protein. (475 aa)
EKF76027.1Porin; COG3203 Outer membrane protein (porin). (329 aa)
EKF76087.1Twin-arginine translocation pathway signal; COG3540 Phosphodiesterase/alkaline phosphatase D. (572 aa)
ntrCTwo-component response regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (477 aa)
EKF76137.1Sensory box histidine kinase NtrB; COG3852 Signal transduction histidine kinase, nitrogen specific. (369 aa)
EKF76139.1COG0174 Glutamine synthetase. (468 aa)
EKF75547.1DNA-binding heavy metal response regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (232 aa)
EKF75549.1ColS; COG0642 Signal transduction histidine kinase. (421 aa)
EKF75555.1Hypothetical protein; COG2199 FOG: GGDEF domain. (263 aa)
EKF75565.1COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (428 aa)
EKF75592.1Hypothetical protein; COG3264 Small-conductance mechanosensitive channel. (1102 aa)
EKF75614.1COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. (462 aa)
EKF75619.1Hypothetical protein; COG2346 Truncated hemoglobins. (142 aa)
EKF75621.1Hypothetical protein; COG1680 Beta-lactamase class C and other penicillin binding proteins. (403 aa)
EKF75648.1LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (225 aa)
EKF75669.1Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase. (643 aa)
EKF75670.1Hypothetical protein; COG2984 ABC-type uncharacterized transport system, periplasmic component. (284 aa)
EKF75671.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (684 aa)
EKF75677.1COG1426 Uncharacterized protein conserved in bacteria. (301 aa)
EKF75692.1OmpA-like transmembrane region; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (173 aa)
EKF75722.1COG1612 Uncharacterized protein required for cytochrome oxidase assembly. (351 aa)
EKF75730.1Sodium solute transporter family protein; COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (511 aa)
EKF75747.1Hypothetical protein. (135 aa)
EKF75751.1anti-sigma-K factor RskA; COG5343 Uncharacterized protein conserved in bacteria. (229 aa)
EKF75752.1COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (185 aa)
EKF75821.1Two-component sensor histidine kinase protein; COG0642 Signal transduction histidine kinase. (1113 aa)
EKF75822.1LuxR family transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (303 aa)
EKF75342.1Sensory box histidine kinase; COG0591 Na+/proline symporter. (984 aa)
EKF75343.1Nitrogen regulation protein NR(I); COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (443 aa)
EKF75351.1EmrB/QacA subfamily drug resistance transporter; COG0477 Permeases of the major facilitator superfamily. (513 aa)
EKF75352.1HlyD family protein secretion protein; COG1566 Multidrug resistance efflux pump. (334 aa)
infBTranslation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (896 aa)
EKF75390.1COG0415 Deoxyribodipyrimidine photolyase. (501 aa)
EKF75391.1DASH family cryptochrome; COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (505 aa)
EKF75420.1COG0642 Signal transduction histidine kinase. (629 aa)
EKF75460.1Alginate biosynthesis regulator; COG3279 Response regulator of the LytR/AlgR family. (246 aa)
EKF75461.1Two-component system sensor protein, alginate biosynthesis; COG2972 Predicted signal transduction protein with a C-terminal ATPase domain. (345 aa)
EKF75468.1COG3159 Uncharacterized protein conserved in bacteria. (241 aa)
EKF75481.1Hypothetical protein; COG0730 Predicted permeases. (267 aa)
EKF75489.1COG2217 Cation transport ATPase. (832 aa)
EKF75496.1COG3667 Uncharacterized protein involved in copper resistance. (204 aa)
EKF75510.1COG4206 Outer membrane cobalamin receptor protein. (607 aa)
EKF75198.1Type IV fimbriae assembly protein; COG3215 Tfp pilus assembly protein PilZ. (115 aa)
EKF75218.1COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (156 aa)
EKF75267.1COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (217 aa)
EKF75284.1Cyclic nucleotide-binding protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (356 aa)
EKF75305.1Phosphotransferase-histidine kinase family protein; COG0642 Signal transduction histidine kinase. (834 aa)
EKF75035.1Transcriptional regulator Anr; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (230 aa)
EKF75038.1Two-component sensor; COG0642 Signal transduction histidine kinase. (694 aa)
EKF75039.1Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase. (930 aa)
EKF75040.1Hypothetical protein; COG3540 Phosphodiesterase/alkaline phosphatase D. (470 aa)
EKF75053.1COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. (417 aa)
EKF75070.1Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (317 aa)
EKF75080.1COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family. (112 aa)
EKF75081.1Ammonium transporter; COG0004 Ammonia permease. (429 aa)
glnDPII uridylyl-transferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. (887 aa)
EKF74922.1Cyd operon protein YbgT; COG4890 Predicted outer membrane lipoprotein. (35 aa)
EKF74923.1COG1294 Cytochrome bd-type quinol oxidase, subunit 2. (382 aa)
EKF74924.1COG1271 Cytochrome bd-type quinol oxidase, subunit 1. (521 aa)
EKF74928.1COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
EKF74955.1EmrB/QacA family drug resistance transporter; COG0477 Permeases of the major facilitator superfamily. (484 aa)
EKF74959.1Hypothetical protein. (450 aa)
EKF74966.1Hypothetical protein. (119 aa)
EKF74972.1ATP-binding Mrp/Nbp35 family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (361 aa)
EKF74979.1Hypothetical protein; COG0593 ATPase involved in DNA replication initiation; Belongs to the DnaA family. HdA subfamily. (229 aa)
EKF74985.1COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa)
EKF74987.1COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (128 aa)
EKF74832.1Sensory box protein/response regulator; COG0784 FOG: CheY-like receiver. (167 aa)
EKF74839.1COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain. (361 aa)
EKF74843.1Sodium:dicarboxylate symporter family protein; COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (432 aa)
EKF74845.1Ammonium transporter; COG0004 Ammonia permease. (429 aa)
EKF74876.1COG0477 Permeases of the major facilitator superfamily. (443 aa)
EKF74905.1Hypothetical protein. (561 aa)
EKF74735.1Osmolarity sensor protein EnvZ; COG0642 Signal transduction histidine kinase. (439 aa)
ompRCOG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (236 aa)
EKF74737.1Multidrug resistance protein; COG0845 Membrane-fusion protein. (430 aa)
EKF74739.1PilH family regulatory protein; COG0784 FOG: CheY-like receiver. (120 aa)
EKF74740.1S1 RNA-binding domain-containing protein; COG2183 Transcriptional accessory protein. (782 aa)
EKF74743.1COG4585 Signal transduction histidine kinase. (709 aa)
EKF74744.1LuxR family two component transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (220 aa)
EKF74748.1Hypothetical protein; COG1380 Putative effector of murein hydrolase LrgA. (121 aa)
EKF74749.1COG1346 Putative effector of murein hydrolase. (238 aa)
EKF74764.1COG5343 Uncharacterized protein conserved in bacteria. (229 aa)
EKF74765.1COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (145 aa)
EKF74770.1COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (388 aa)
EKF74802.1EmrB/QacA family drug resistance transporter; COG0477 Permeases of the major facilitator superfamily. (516 aa)
EKF74633.1Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (310 aa)
EKF74650.1Sugar transporter family protein 14; COG0477 Permeases of the major facilitator superfamily. (425 aa)
EKF74656.1COG0642 Signal transduction histidine kinase. (449 aa)
EKF74657.1COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain. (185 aa)
EKF74676.1Hypothetical protein. (367 aa)
EKF74529.1Sensory box protein; COG2202 FOG: PAS/PAC domain. (931 aa)
EKF74541.1Abortive infection protein; COG1805 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB. (281 aa)
EKF74545.1COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component. (456 aa)
EKF74546.1COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (181 aa)
EKF74547.1Phosphate ABC transporter substrate-binding protein; COG0226 ABC-type phosphate transport system, periplasmic component. (352 aa)
EKF74553.1Arsenate reductase; COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (164 aa)
EKF74568.1GAF/PAS/GGDEF domain-containing protein; COG2203 FOG: GAF domain. (481 aa)
EKF74572.1ATPase family protein; COG4585 Signal transduction histidine kinase. (698 aa)
EKF74573.1COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (214 aa)
glsAL-glutaminase; COG2066 Glutaminase; Belongs to the glutaminase family. (351 aa)
EKF74399.1COG1004 Predicted UDP-glucose 6-dehydrogenase. (437 aa)
EKF74404.1Alginate o-acetyltransferase AlgI; COG1696 Predicted membrane protein involved in D-alanine export; Belongs to the membrane-bound acyltransferase family. (472 aa)
EKF74443.1LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. (216 aa)
EKF74463.1COG0642 Signal transduction histidine kinase. (796 aa)
EKF74464.1Hypothetical protein. (184 aa)
EKF74494.1COG4968 Tfp pilus assembly protein PilE. (152 aa)
EKF74497.1Fis family transcriptional regulator; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (459 aa)
EKF74498.1COG0642 Signal transduction histidine kinase. (517 aa)
tsaCSua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. (182 aa)
EKF74349.1COG4963 Flp pilus assembly protein, ATPase CpaE. (391 aa)
EKF74370.1Hypothetical protein. (202 aa)
EKF74379.1EmrB/QacA family drug resistance transporter; COG0477 Permeases of the major facilitator superfamily. (518 aa)
EKF74380.1HlyD family secretion protein; COG1566 Multidrug resistance efflux pump. (391 aa)
EKF74391.1COG0642 Signal transduction histidine kinase. (482 aa)
EKF74392.1Response regulator; COG0784 FOG: CheY-like receiver. (149 aa)
EKF74397.1Cation efflux system protein; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1047 aa)
EKF74211.1COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
EKF74232.1COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain. (311 aa)
EKF74234.1TonB dependent receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport. (636 aa)
EKF74236.1Phosphotransferase; COG0642 Signal transduction histidine kinase. (452 aa)
EKF74237.1Two-component response regulatory protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (223 aa)
EKF74238.1Hypothetical protein. (113 aa)
EKF74245.1COG1115 Na+/alanine symporter. (446 aa)
EKF74247.1Fimbrial protein pilin; COG4969 Tfp pilus assembly protein, major pilin PilA; Belongs to the N-Me-Phe pilin family. (164 aa)
EKF74281.1COG2857 Cytochrome c1. (217 aa)
EKF74282.1Ubiquinol-cytochrome c reductase cytochrome subunit B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (422 aa)
EKF74283.1Ubiquinol--cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (196 aa)
EKF74155.1Cyclic nucleotide-binding protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (260 aa)
EKF74167.1Cyclic nucleotide-binding protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (153 aa)
EKF74177.1RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (469 aa)
EKF74189.1COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. (381 aa)
EKF74046.1Transcriptional regulator Anr; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (236 aa)
EKF74053.1Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (308 aa)
EKF74062.1Sua5/YciO/YrdC/YwlC family protein; COG0009 Putative translation factor (SUA5); Belongs to the SUA5 family. (207 aa)
EKF74073.1ABC transporter permease; COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component. (806 aa)
EKF73976.1COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain. (184 aa)
EKF73977.1Hypothetical protein; COG0642 Signal transduction histidine kinase. (389 aa)
EKF73999.1DNA photolyase; COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (488 aa)
EKF73910.1Hypothetical protein. (380 aa)
EKF73925.1Porin; COG3203 Outer membrane protein (porin). (355 aa)
EKF73926.1Porin; COG3203 Outer membrane protein (porin). (337 aa)
EKF73932.1Sensor/response regulator hybrid; COG0642 Signal transduction histidine kinase. (904 aa)
EKF73937.1Hypothetical protein. (89 aa)
EKF73940.1Alginate biosynthesis negative regulator, serine protease; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. (481 aa)
EKF73944.1COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)
EKF73873.1Hypothetical protein. (86 aa)
EKF73766.1Diguanylate cyclase; COG2199 FOG: GGDEF domain; overlaps another CDS with the same product name. (367 aa)
EKF73769.1COG0642 Signal transduction histidine kinase. (540 aa)
EKF73770.1COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (240 aa)
EKF73784.1Hypothetical protein. (1009 aa)
EKF73797.1COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (429 aa)
EKF73798.1COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (164 aa)
EKF73799.1COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component. (329 aa)
EKF73709.1DNA-binding heavy metal response regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (229 aa)
EKF73721.1Hypothetical protein; COG0730 Predicted permeases. (247 aa)
EKF73732.1Hypothetical protein; COG0668 Small-conductance mechanosensitive channel. (269 aa)
EKF73742.1COG0642 Signal transduction histidine kinase. (469 aa)
EKF73743.1COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (221 aa)
EKF73643.1Hypothetical protein; COG2703 Hemerythrin. (154 aa)
EKF73646.1Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (303 aa)
EKF73657.1COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription. (232 aa)
EKF73667.1COG2916 DNA-binding protein H-NS; Belongs to the histone-like protein H-NS family. (118 aa)
dnaAChromosome replication initiator DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (472 aa)
mnmEtRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (456 aa)
EKF73685.1COG0286 Type I restriction-modification system methyltransferase subunit. (722 aa)
EKF73596.1Sensory box protein/response regulator; COG0784 FOG: CheY-like receiver. (377 aa)
EKF73597.1Protein-glutamate methylesterase; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain. (174 aa)
EKF73598.1Sensory box protein/response regulator; COG0784 FOG: CheY-like receiver. (155 aa)
EKF73599.1COG1352 Methylase of chemotaxis methyl-accepting proteins. (287 aa)
EKF73600.1Sensor histidine kinase/respose regulator; COG0642 Signal transduction histidine kinase. (1222 aa)
EKF73603.1COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (217 aa)
EKF73543.1COG0286 Type I restriction-modification system methyltransferase subunit. (580 aa)
EKF73576.1Two-component hybrid sensor and regulator; COG2198 FOG: HPt domain. (112 aa)
EKF73513.1Metal dependent phosphohydrolase; COG0840 Methyl-accepting chemotaxis protein. (1048 aa)
EKF73514.1COG1294 Cytochrome bd-type quinol oxidase, subunit 2. (332 aa)
EKF73515.1COG1271 Cytochrome bd-type quinol oxidase, subunit 1. (458 aa)
EKF73530.1TonB-dependent outermembrane copper receptor OprC; COG1629 Outer membrane receptor proteins, mostly Fe transport. (677 aa)
EKF73537.1Proton/sodium-glutamate symport protein; COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (453 aa)
EKF73452.1Hypothetical protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component. (331 aa)
EKF73459.1Acriflavin resistance protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1091 aa)
EKF73467.1Hypothetical protein; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component. (733 aa)
EKF73471.1Hypothetical protein. (391 aa)
EKF73472.1Hypothetical protein. (358 aa)
EKF73473.1Hypothetical protein. (389 aa)
EKF73406.1COG0435 Predicted glutathione S-transferase. (333 aa)
EKF73411.1Phosphate regulon sensor protein PhoR; COG0642 Signal transduction histidine kinase. (436 aa)
EKF73412.1Phosphate regulon transcriptional regulatory protein phoB; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (234 aa)
EKF73337.1DNA-binding transcriptional dual regulator Crp; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (209 aa)
EKF73344.1cAMP-dependent protein kinase regulatory chain; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (347 aa)
dusBNifR3 family TIM-barrel protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (346 aa)
EKF73288.1Sodium/sulfate symporter; COG0471 Di- and tricarboxylate transporters. (590 aa)
EKF73300.1Tyrosine-protein kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis. (723 aa)
EKF73301.1Low molecular weight protein-tyrosine-phosphatase wzb; COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (142 aa)
EKF73302.1COG1596 Periplasmic protein involved in polysaccharide export. (379 aa)
mnmGtRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (631 aa)
EKF73203.1Heavy metal sensor histidine kinase; Member of a two-component regulatory system. (468 aa)
EKF73204.1COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (230 aa)
EKF73208.1COG3667 Uncharacterized protein involved in copper resistance. (249 aa)
EKF73227.1Putative integral membrane protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (305 aa)
EKF73231.1Hypothetical protein. (121 aa)
EKF73233.1Heavy metal translocating P-type ATPase; COG2217 Cation transport ATPase. (776 aa)
EKF73238.1RND family efflux transporter MFP subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (555 aa)
EKF73239.1Co/Zn/Cd efflux system membrane protein; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1040 aa)
EKF73154.1Outer membrane protein. (171 aa)
EKF73070.1COG0642 Signal transduction histidine kinase. (739 aa)
EKF73039.1Hypothetical protein; COG0730 Predicted permeases. (264 aa)
EKF73056.1Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (280 aa)
EKF73032.1Hypothetical protein. (255 aa)
csrACarbon storage regulator CsrA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (62 aa)
dusAtRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (310 aa)
EKF73005.1Hypothetical protein; COG3975 Predicted protease with the C-terminal PDZ domain. (596 aa)
EKF72954.1Diguanylate cyclase; COG2199 FOG: GGDEF domain. (347 aa)
EKF72956.1Hypothetical protein. (219 aa)
EKF72934.1Integrase catalytic subunit; COG2801 Transposase and inactivated derivatives. (316 aa)
EKF72939.1Type IV pili response regulator PilG; COG0784 FOG: CheY-like receiver. (127 aa)
EKF72940.1Type IV pili response regulator PilH; COG0784 FOG: CheY-like receiver. (122 aa)
EKF72941.1Type IV pili signal transduction protein PilI; COG0835 Chemotaxis signal transduction protein. (183 aa)
EKF72942.1COG0840 Methyl-accepting chemotaxis protein. (675 aa)
EKF72943.1COG1352 Methylase of chemotaxis methyl-accepting proteins. (292 aa)
EKF72944.1Two-component hybrid chemotactic sensor and regulator; COG0643 Chemotaxis protein histidine kinase and related kinases. (2337 aa)
EKF72945.1Protein-glutamate methylesterase; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain. (338 aa)
EKF72946.1Chemotaxis protein. (151 aa)
dinBDNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (368 aa)
EKF72883.1Chromosome replication initiator DnaA; COG0593 ATPase involved in DNA replication initiation; Belongs to the DnaA family. (255 aa)
EKF72893.1Phosphate ABC transporter substrate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (345 aa)
EKF72874.1Transcriptional regulatory protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (217 aa)
EKF72875.1COG0642 Signal transduction histidine kinase. (445 aa)
EKF72831.1Ammonium transporter; COG0004 Ammonia permease. (419 aa)
EKF72832.1COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family. (112 aa)
EKF72827.1Putative secreted protein. (165 aa)
EKF72817.1COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (417 aa)
EKF72807.1Hypothetical protein. (380 aa)
EKF72784.1Hypothetical protein. (172 aa)
EKF75856.1Diguanylate cyclase; COG2199 FOG: GGDEF domain. (407 aa)
EKF75858.1Chemotaxis sensory transducer family protein; COG2206 HD-GYP domain. (523 aa)
EKF75872.1TRAP dicarboxylate transporter, extracellular solute binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component. (340 aa)
EKF75873.1COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (426 aa)
EKF75874.1COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (193 aa)
EKF75881.1Transcriptional regulator DegU; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (218 aa)
EKF75882.1Na-solute symporter/sensory box histidinekinase; COG0591 Na+/proline symporter. (1158 aa)
dusCDihydrouridine synthase (Dus) superfamily protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily. (315 aa)
Your Current Organism:
Alcanivorax hongdengensis
NCBI taxonomy Id: 1177179
Other names: A. hongdengensis A-11-3, Alcanivorax hongdengensis A-11-3, Alcanivorax hongdengensis str. A-11-3, Alcanivorax hongdengensis strain A-11-3
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