(10 nodes) DNA modification, and Schlafen, AlbA_2 domain network (Spirosoma montaniterrae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQG78595.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	AQG80593.1	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	AQG80594.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (563 aa)
	AQG80595.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (612 aa)
	AQG80596.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (354 aa)
	AQG82625.1	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (814 aa)
	AQG81569.1	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
	AQG81570.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (467 aa)
	AQG81835.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (942 aa)
	AQG81836.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (351 aa)

Your Current Organism:

Spirosoma montaniterrae

NCBI taxonomy Id: 1178516
Other names: JCM 18492, KCTC 23999, KEMB 9004-162, KEMB:9004-162, S. montaniterrae, Spirosoma montaniterrae Lee et al. 2017, Spirosoma sp. DY10, strain DY10

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQG78595.1	AQG81835.1	AWR27_04110	AWR27_22535	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.760
AQG80593.1	AQG80594.1	AWR27_15450	AWR27_15455	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.983
AQG80593.1	AQG80595.1	AWR27_15450	AWR27_15460	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.901
AQG80593.1	AQG80596.1	AWR27_15450	AWR27_15465	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.883
AQG80593.1	AQG81570.1	AWR27_15450	AWR27_21005	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.935
AQG80593.1	AQG81835.1	AWR27_15450	AWR27_22535	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.790
AQG80593.1	AQG81836.1	AWR27_15450	AWR27_22540	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.909
AQG80593.1	AQG82625.1	AWR27_15450	AWR27_20990	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
AQG80594.1	AQG80593.1	AWR27_15455	AWR27_15450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AQG80594.1	AQG80595.1	AWR27_15455	AWR27_15460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.888
AQG80594.1	AQG80596.1	AWR27_15455	AWR27_15465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.864
AQG80594.1	AQG81569.1	AWR27_15455	AWR27_21000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AQG80594.1	AQG81570.1	AWR27_15455	AWR27_21005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.741
AQG80594.1	AQG81835.1	AWR27_15455	AWR27_22535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.915
AQG80594.1	AQG81836.1	AWR27_15455	AWR27_22540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.457
AQG80594.1	AQG82625.1	AWR27_15455	AWR27_20990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AQG80595.1	AQG80593.1	AWR27_15460	AWR27_15450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AQG80595.1	AQG80594.1	AWR27_15460	AWR27_15455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.888
AQG80595.1	AQG80596.1	AWR27_15460	AWR27_15465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.951
AQG80595.1	AQG81835.1	AWR27_15460	AWR27_22535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.521

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