(15 nodes) Mixed, incl. ABC-type maltose transporter activity, and Bacterial extracellular solute-binding protein network (Enterococcus rotai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS35831.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	ALS35832.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ALS35833.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
	ALS36818.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
	ALS36819.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	ALS36820.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	ALS37228.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (369 aa)
	ALS37915.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	ALS37916.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ALS37917.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	ALS37918.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family. (715 aa)
	ALS37919.1	Cellobiose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1101 aa)
	ALS37920.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	ALS37921.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	ALS37922.1	Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)

Your Current Organism:

Enterococcus rotai

NCBI taxonomy Id: 118060
Other names: CCM 4630, CCUG 61593, E. rotai, Enterococcus rotai Sedlacek et al. 2013, Enterococcus sp. CCM 4360, LMG 26678, LMG:26678

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS35831.1	ALS35832.1	ATZ35_01250	ATZ35_01255	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ALS35831.1	ALS35833.1	ATZ35_01250	ATZ35_01260	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
ALS35831.1	ALS36818.1	ATZ35_01250	ATZ35_06505	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
ALS35831.1	ALS36819.1	ATZ35_01250	ATZ35_06510	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
ALS35831.1	ALS36820.1	ATZ35_01250	ATZ35_06515	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
ALS35831.1	ALS37228.1	ATZ35_01250	ATZ35_08670	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.985
ALS35831.1	ALS37915.1	ATZ35_01250	ATZ35_12400	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
ALS35831.1	ALS37916.1	ATZ35_01250	ATZ35_12405	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
ALS35832.1	ALS35831.1	ATZ35_01255	ATZ35_01250	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ALS35832.1	ALS35833.1	ATZ35_01255	ATZ35_01260	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ALS35832.1	ALS36818.1	ATZ35_01255	ATZ35_06505	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
ALS35832.1	ALS36819.1	ATZ35_01255	ATZ35_06510	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
ALS35832.1	ALS36820.1	ATZ35_01255	ATZ35_06515	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
ALS35832.1	ALS37228.1	ATZ35_01255	ATZ35_08670	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.995
ALS35832.1	ALS37915.1	ATZ35_01255	ATZ35_12400	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
ALS35832.1	ALS37917.1	ATZ35_01255	ATZ35_12410	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
ALS35832.1	ALS37920.1	ATZ35_01255	ATZ35_12425	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ALS35833.1	ALS35831.1	ATZ35_01260	ATZ35_01250	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
ALS35833.1	ALS35832.1	ATZ35_01260	ATZ35_01255	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ALS35833.1	ALS36818.1	ATZ35_01260	ATZ35_06505	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539