(21 nodes) Mixed, incl. Type 1 protein exporter, and Domain of unknown function (DUF4135) network (Enterococcus rotai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS36075.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	ALS36145.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (202 aa)
	ALS36146.1	6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 1 family. (474 aa)
	ALS36148.1	Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	ALS36150.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	ALS36151.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (580 aa)
	ALS38735.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (591 aa)
	ALS36402.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (60 aa)
	ALS36403.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (901 aa)
	ALS36404.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (711 aa)
	ALS36405.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	ALS36683.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (705 aa)
	ALS37051.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	ALS37052.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
	ALS37053.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	ALS37231.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (587 aa)
	ALS37232.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (574 aa)
	ALS37698.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (583 aa)
	ALS37699.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa)
	ALS38634.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	ALS38635.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)

Your Current Organism:

Enterococcus rotai

NCBI taxonomy Id: 118060
Other names: CCM 4630, CCUG 61593, E. rotai, Enterococcus rotai Sedlacek et al. 2013, Enterococcus sp. CCM 4360, LMG 26678, LMG:26678

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS36075.1	ALS36683.1	ATZ35_02530	ATZ35_05795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
ALS36146.1	ALS36148.1	ATZ35_02905	ATZ35_02915	6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 1 family.	Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
ALS36148.1	ALS36146.1	ATZ35_02915	ATZ35_02905	Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.	6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 1 family.	0.571
ALS36148.1	ALS36150.1	ATZ35_02915	ATZ35_02925	Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
ALS36150.1	ALS36148.1	ATZ35_02925	ATZ35_02915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
ALS36150.1	ALS36151.1	ATZ35_02925	ATZ35_02930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
ALS36150.1	ALS38735.1	ATZ35_02925	ATZ35_02935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
ALS36151.1	ALS36150.1	ATZ35_02930	ATZ35_02925	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
ALS36151.1	ALS36404.1	ATZ35_02930	ATZ35_04275	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
ALS36151.1	ALS36683.1	ATZ35_02930	ATZ35_05795	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
ALS36151.1	ALS37053.1	ATZ35_02930	ATZ35_07755	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.596
ALS36151.1	ALS37231.1	ATZ35_02930	ATZ35_08685	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
ALS36151.1	ALS37698.1	ATZ35_02930	ATZ35_11210	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
ALS36151.1	ALS37699.1	ATZ35_02930	ATZ35_11215	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
ALS36151.1	ALS38634.1	ATZ35_02930	ATZ35_16210	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
ALS36151.1	ALS38735.1	ATZ35_02930	ATZ35_02935	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
ALS36402.1	ALS36403.1	ATZ35_04265	ATZ35_04270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
ALS36402.1	ALS36404.1	ATZ35_04265	ATZ35_04275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
ALS36402.1	ALS36405.1	ATZ35_04265	ATZ35_04280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
ALS36403.1	ALS36402.1	ATZ35_04270	ATZ35_04265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.610