(36 nodes) ATP-binding cassette (ABC) transporter complex network (Enterococcus rotai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS37556.1	Molybdenum ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	ALS38813.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (556 aa)
	ALS37948.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
	ALS38162.1	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	ALS38827.1	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	ALS38600.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	potA	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (361 aa)
	ALS38676.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (717 aa)
	ALS36876.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	ALS36949.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	ALS37005.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	ALS37037.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
	ALS37075.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	ALS37078.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	ALS37130.1	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	ALS37163.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	ALS37179.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	ALS37350.1	Teichoic acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	ALS37401.1	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	ALS37528.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	ALS37680.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	ALS36076.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (248 aa)
	ALS36077.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	ALS38732.1	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	ALS36133.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (546 aa)
	ALS36153.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	ALS38737.1	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	ALS38745.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
	ALS38747.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	ALS36388.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)
	ALS36478.1	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	ALS36484.1	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	ALS36731.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (550 aa)
	ALS36733.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	ALS36764.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	ALS36818.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)

Your Current Organism:

Enterococcus rotai

NCBI taxonomy Id: 118060
Other names: CCM 4630, CCUG 61593, E. rotai, Enterococcus rotai Sedlacek et al. 2013, Enterococcus sp. CCM 4360, LMG 26678, LMG:26678

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS36076.1	ALS36077.1	ATZ35_02535	ATZ35_02540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
ALS36077.1	ALS36076.1	ATZ35_02540	ATZ35_02535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.790
ALS36133.1	ALS36153.1	ATZ35_02830	ATZ35_02945	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ALS36133.1	ALS36388.1	ATZ35_02830	ATZ35_04195	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
ALS36133.1	ALS36731.1	ATZ35_02830	ATZ35_06050	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
ALS36133.1	ALS36764.1	ATZ35_02830	ATZ35_06225	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
ALS36133.1	ALS37005.1	ATZ35_02830	ATZ35_07460	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
ALS36133.1	ALS37037.1	ATZ35_02830	ATZ35_07660	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
ALS36133.1	ALS37078.1	ATZ35_02830	ATZ35_07880	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
ALS36133.1	ALS37163.1	ATZ35_02830	ATZ35_08320	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ALS36133.1	ALS37179.1	ATZ35_02830	ATZ35_08410	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
ALS36133.1	ALS38676.1	ATZ35_02830	ATZ35_16425	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ALS36133.1	ALS38737.1	ATZ35_02830	ATZ35_03010	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
ALS36133.1	ALS38745.1	ATZ35_02830	ATZ35_03900	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
ALS36133.1	ALS38747.1	ATZ35_02830	ATZ35_04090	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
ALS36133.1	ALS38813.1	ATZ35_02830	ATZ35_12220	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ALS36153.1	ALS36133.1	ATZ35_02945	ATZ35_02830	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ALS36153.1	ALS36388.1	ATZ35_02945	ATZ35_04195	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
ALS36153.1	ALS36478.1	ATZ35_02945	ATZ35_04675	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
ALS36153.1	ALS36731.1	ATZ35_02945	ATZ35_06050	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409