(29 nodes) Plasma membrane protein complex network (Enterococcus rotai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS37556.1	Molybdenum ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	ALS38503.1	Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1179 aa)
	ALS38518.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	ALS38599.1	Glycine betaine/L-proline ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	potA	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (361 aa)
	ALS37419.1	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
	ALS37418.1	Cysteine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
	ALS37401.1	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	ALS37379.1	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)
	ALS38789.1	Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1225 aa)
	ALS37350.1	Teichoic acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	ALS37291.1	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	ALS37228.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (369 aa)
	ALS37130.1	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	ALS37090.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
	ALS36819.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	ALS36818.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
	ALS36785.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	ALS36550.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	ALS36484.1	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	ALS36478.1	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	ALS36234.1	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
	ALS36085.1	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	ALS36084.1	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	ALS35901.1	Potassium transporter Trk; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	ALS35832.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ALS38353.1	Cobalt ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	ALS37948.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
	ALS37916.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)

Your Current Organism:

Enterococcus rotai

NCBI taxonomy Id: 118060
Other names: CCM 4630, CCUG 61593, E. rotai, Enterococcus rotai Sedlacek et al. 2013, Enterococcus sp. CCM 4360, LMG 26678, LMG:26678

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS35832.1	ALS36234.1	ATZ35_01255	ATZ35_03370	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
ALS35832.1	ALS36818.1	ATZ35_01255	ATZ35_06505	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
ALS35832.1	ALS36819.1	ATZ35_01255	ATZ35_06510	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
ALS35832.1	ALS37228.1	ATZ35_01255	ATZ35_08670	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.995
ALS35832.1	ALS37350.1	ATZ35_01255	ATZ35_09330	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Teichoic acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
ALS35832.1	ALS37948.1	ATZ35_01255	ATZ35_12575	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
ALS35832.1	potA	ATZ35_01255	ATZ35_16060	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.425
ALS35901.1	ALS38503.1	ATZ35_01640	ATZ35_15520	Potassium transporter Trk; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
ALS35901.1	ALS38789.1	ATZ35_01640	ATZ35_09465	Potassium transporter Trk; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
ALS36084.1	ALS36085.1	ATZ35_02575	ATZ35_02580	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ALS36084.1	ALS38518.1	ATZ35_02575	ATZ35_15595	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
ALS36085.1	ALS36084.1	ATZ35_02580	ATZ35_02575	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ALS36085.1	ALS38518.1	ATZ35_02580	ATZ35_15595	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
ALS36234.1	ALS35832.1	ATZ35_03370	ATZ35_01255	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
ALS36234.1	ALS36819.1	ATZ35_03370	ATZ35_06510	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
ALS36234.1	ALS37916.1	ATZ35_03370	ATZ35_12405	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
ALS36478.1	ALS36484.1	ATZ35_04675	ATZ35_04705	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ALS36478.1	ALS37228.1	ATZ35_04675	ATZ35_08670	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.511
ALS36478.1	ALS37401.1	ATZ35_04675	ATZ35_09620	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Manganese ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
ALS36478.1	ALS38518.1	ATZ35_04675	ATZ35_15595	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708