(35 nodes) ABC transporter type 1, transmembrane domain MetI-like network (Enterococcus rotai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS38676.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (717 aa)
	ALS37075.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	ALS36876.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	ALS36820.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	ALS36819.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	ALS36390.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	ALS36389.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	ALS36254.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	ALS36253.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	ALS36164.1	Nickel ABC transporter permease subunit NikB; With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	ALS36163.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	ALS36153.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	ALS36113.1	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	ALS36085.1	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	ALS36084.1	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	ALS35832.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ALS35831.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	ALS37129.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	ALS37131.1	Choline ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	ALS37163.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	ALS37181.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	ALS37182.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	ALS37396.1	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	ALS37528.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	ALS37555.1	Molybdenum ABC transporter permease; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (223 aa)
	ALS37659.1	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (306 aa)
	ALS37660.1	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ALS37916.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ALS37917.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	ALS38162.1	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	ALS38827.1	Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	ALS38844.1	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	ALS38600.1	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	ALS38603.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	ALS38604.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)

Your Current Organism:

Enterococcus rotai

NCBI taxonomy Id: 118060
Other names: CCM 4630, CCUG 61593, E. rotai, Enterococcus rotai Sedlacek et al. 2013, Enterococcus sp. CCM 4360, LMG 26678, LMG:26678

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS35831.1	ALS35832.1	ATZ35_01250	ATZ35_01255	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ALS35831.1	ALS36254.1	ATZ35_01250	ATZ35_03470	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
ALS35831.1	ALS36819.1	ATZ35_01250	ATZ35_06510	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
ALS35831.1	ALS36820.1	ATZ35_01250	ATZ35_06515	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
ALS35831.1	ALS37916.1	ATZ35_01250	ATZ35_12405	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
ALS35831.1	ALS38604.1	ATZ35_01250	ATZ35_16055	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
ALS35832.1	ALS35831.1	ATZ35_01255	ATZ35_01250	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ALS35832.1	ALS36253.1	ATZ35_01255	ATZ35_03465	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
ALS35832.1	ALS36254.1	ATZ35_01255	ATZ35_03470	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
ALS35832.1	ALS36819.1	ATZ35_01255	ATZ35_06510	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
ALS35832.1	ALS36820.1	ATZ35_01255	ATZ35_06515	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
ALS35832.1	ALS37917.1	ATZ35_01255	ATZ35_12410	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
ALS35832.1	ALS38603.1	ATZ35_01255	ATZ35_16050	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
ALS36084.1	ALS36085.1	ATZ35_02575	ATZ35_02580	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ALS36085.1	ALS36084.1	ATZ35_02580	ATZ35_02575	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ALS36113.1	ALS37396.1	ATZ35_02730	ATZ35_09595	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
ALS36113.1	ALS38844.1	ATZ35_02730	ATZ35_15305	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
ALS36153.1	ALS36876.1	ATZ35_02945	ATZ35_06810	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
ALS36153.1	ALS37075.1	ATZ35_02945	ATZ35_07865	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
ALS36153.1	ALS37129.1	ATZ35_02945	ATZ35_08145	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709