(18 nodes) ABC3 transporter permease protein domain network (Enterococcus rotai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS38434.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (769 aa)
	ALS38703.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
	ALS37092.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	ALS38790.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
	ALS37427.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
	ALS37656.1	Cell division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (294 aa)
	ALS38152.1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	ALS38195.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)
	ALS38537.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
	ALS35756.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (695 aa)
	ALS36040.1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	ALS36357.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	ALS36375.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa)
	ALS36550.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	ALS36655.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (758 aa)
	ALS36772.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	ALS36785.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	ALS37090.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)

Your Current Organism:

Enterococcus rotai

NCBI taxonomy Id: 118060
Other names: CCM 4630, CCUG 61593, E. rotai, Enterococcus rotai Sedlacek et al. 2013, Enterococcus sp. CCM 4360, LMG 26678, LMG:26678

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS35756.1	ALS36375.1	ATZ35_00855	ATZ35_04130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
ALS35756.1	ALS37427.1	ATZ35_00855	ATZ35_09760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
ALS35756.1	ALS38434.1	ATZ35_00855	ATZ35_15145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
ALS35756.1	ALS38703.1	ATZ35_00855	ATZ35_16560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
ALS36040.1	ALS36772.1	ATZ35_02350	ATZ35_06265	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
ALS36040.1	ALS38152.1	ATZ35_02350	ATZ35_13645	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
ALS36040.1	ALS38537.1	ATZ35_02350	ATZ35_15695	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
ALS36040.1	ALS38703.1	ATZ35_02350	ATZ35_16560	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
ALS36357.1	ALS38703.1	ATZ35_04030	ATZ35_16560	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
ALS36375.1	ALS35756.1	ATZ35_04130	ATZ35_00855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
ALS36375.1	ALS38703.1	ATZ35_04130	ATZ35_16560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
ALS36550.1	ALS38703.1	ATZ35_05060	ATZ35_16560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
ALS36655.1	ALS38703.1	ATZ35_05605	ATZ35_16560	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
ALS36772.1	ALS36040.1	ATZ35_06265	ATZ35_02350	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
ALS36772.1	ALS38703.1	ATZ35_06265	ATZ35_16560	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
ALS36785.1	ALS38703.1	ATZ35_06330	ATZ35_16560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
ALS37090.1	ALS37092.1	ATZ35_07945	ATZ35_07955	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
ALS37090.1	ALS38195.1	ATZ35_07945	ATZ35_13875	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
ALS37090.1	ALS38703.1	ATZ35_07945	ATZ35_16560	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
ALS37092.1	ALS37090.1	ATZ35_07955	ATZ35_07945	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890