(30 nodes) CheY-like superfamily network (Enterococcus rotai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS36043.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	ALS36773.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	ALS36096.1	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	ALS37204.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	ALS38095.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	ALS36293.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	ALS36329.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	ALS36378.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	ALS36548.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	ALS36625.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	ALS36651.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	ALS36657.1	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	ALS38013.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	ALS37981.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	ALS37946.1	PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	ALS37814.1	PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	ALS37741.1	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	ALS37572.1	LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	ALS35600.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	ALS35609.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	ALS35664.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	ALS35902.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	ALS35995.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	ALS36735.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	ALS36787.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	ALS37383.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	ALS38775.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	ALS37482.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	ALS36249.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
	ALS36123.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)

Your Current Organism:

Enterococcus rotai

NCBI taxonomy Id: 118060
Other names: CCM 4630, CCUG 61593, E. rotai, Enterococcus rotai Sedlacek et al. 2013, Enterococcus sp. CCM 4360, LMG 26678, LMG:26678

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS35600.1	ALS35609.1	ATZ35_00015	ATZ35_00060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
ALS35600.1	ALS36096.1	ATZ35_00015	ATZ35_02640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
ALS35600.1	ALS36378.1	ATZ35_00015	ATZ35_04145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
ALS35600.1	ALS36548.1	ATZ35_00015	ATZ35_05050	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
ALS35600.1	ALS36787.1	ATZ35_00015	ATZ35_06340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
ALS35600.1	ALS37204.1	ATZ35_00015	ATZ35_08545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
ALS35600.1	ALS37383.1	ATZ35_00015	ATZ35_09515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
ALS35600.1	ALS37482.1	ATZ35_00015	ATZ35_10060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
ALS35600.1	ALS37946.1	ATZ35_00015	ATZ35_12565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
ALS35600.1	ALS38095.1	ATZ35_00015	ATZ35_13355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
ALS35600.1	ALS38775.1	ATZ35_00015	ATZ35_07935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
ALS35609.1	ALS35600.1	ATZ35_00060	ATZ35_00015	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
ALS35609.1	ALS36043.1	ATZ35_00060	ATZ35_02365	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
ALS35609.1	ALS36249.1	ATZ35_00060	ATZ35_03445	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
ALS35609.1	ALS36378.1	ATZ35_00060	ATZ35_04145	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
ALS35609.1	ALS36787.1	ATZ35_00060	ATZ35_06340	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
ALS35609.1	ALS37204.1	ATZ35_00060	ATZ35_08545	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
ALS35609.1	ALS38095.1	ATZ35_00060	ATZ35_13355	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ALS35609.1	ALS38775.1	ATZ35_00060	ATZ35_07935	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
ALS35664.1	ALS36293.1	ATZ35_00360	ATZ35_03675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457