(22 nodes) ABC transporter type 1, transmembrane domain superfamily network (Enterococcus rotai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALS36288.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (591 aa)
	ALS36151.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (580 aa)
	ALS35956.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (713 aa)
	ALS38634.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	ALS38383.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (793 aa)
	ALS38382.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
	ALS37699.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa)
	ALS37698.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (583 aa)
	ALS37573.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (716 aa)
	ALS37419.1	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
	ALS37418.1	Cysteine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
	ALS37258.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (628 aa)
	ALS37257.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)
	ALS37232.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (574 aa)
	ALS37231.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (587 aa)
	ALS37053.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	ALS37052.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
	ALS36683.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (705 aa)
	ALS36404.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (711 aa)
	ALS35916.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (588 aa)
	ALS35917.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
	ALS38735.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (591 aa)

Your Current Organism:

Enterococcus rotai

NCBI taxonomy Id: 118060
Other names: CCM 4630, CCUG 61593, E. rotai, Enterococcus rotai Sedlacek et al. 2013, Enterococcus sp. CCM 4360, LMG 26678, LMG:26678

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS35916.1	ALS35917.1	ATZ35_01715	ATZ35_01720	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ALS35916.1	ALS35956.1	ATZ35_01715	ATZ35_01930	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
ALS35916.1	ALS36151.1	ATZ35_01715	ATZ35_02930	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
ALS35916.1	ALS36404.1	ATZ35_01715	ATZ35_04275	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
ALS35916.1	ALS36683.1	ATZ35_01715	ATZ35_05795	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
ALS35916.1	ALS37052.1	ATZ35_01715	ATZ35_07750	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
ALS35916.1	ALS37232.1	ATZ35_01715	ATZ35_08690	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
ALS35916.1	ALS37257.1	ATZ35_01715	ATZ35_08825	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
ALS35916.1	ALS37573.1	ATZ35_01715	ATZ35_10535	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
ALS35916.1	ALS38383.1	ATZ35_01715	ATZ35_14870	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
ALS35917.1	ALS35916.1	ATZ35_01720	ATZ35_01715	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ALS35917.1	ALS35956.1	ATZ35_01720	ATZ35_01930	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
ALS35917.1	ALS36404.1	ATZ35_01720	ATZ35_04275	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
ALS35917.1	ALS36683.1	ATZ35_01720	ATZ35_05795	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
ALS35917.1	ALS37053.1	ATZ35_01720	ATZ35_07755	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
ALS35917.1	ALS37231.1	ATZ35_01720	ATZ35_08685	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
ALS35917.1	ALS37258.1	ATZ35_01720	ATZ35_08830	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
ALS35917.1	ALS37573.1	ATZ35_01720	ATZ35_10535	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
ALS35917.1	ALS37698.1	ATZ35_01720	ATZ35_11210	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
ALS35917.1	ALS37699.1	ATZ35_01720	ATZ35_11215	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570