Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| MCBB_1258 | aphA1 | MCBB_1258 | MCBB_1683 | Putative protein AZC_3085; sp|Q04855|Y3085_AZOC5;evalue=3e-013; PctID=31.97; score=78.2. | Cyanobacterial phytochrome A; Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. phospho-L-histidine. family; sp|Q9LCC2|PHYA_NOSS1;evalue=2e-065; PctID=52.65; score=250. | 0.463 |
| MCBB_1258 | msmS | MCBB_1258 | MCBB_1296 | Putative protein AZC_3085; sp|Q04855|Y3085_AZOC5;evalue=3e-013; PctID=31.97; score=78.2. | Heme-binding sensor kinase component part of a two-component regulatory system involved in methyl sulfide metabolism. Does not act as a phytochrome-like photoreceptor. phospho-L-histidine. Name=heme; Xref=ChEBI:CHEBI:30413; Evidence=; Note=Heme-binding is redox-active and coordinates various ligands such as imidazole, dimethyl sulfide, and carbon monoxide depending on the redox state. The redox state of the heme cofactor influences on autophosphorylation activity: while reduced protein does not autophosphorylate, oxidized protein promotes autophosphorylation signal; redox state of heme [...] | 0.947 |
| MCBB_1258 | pdtaR7 | MCBB_1258 | MCBB_2021 | Putative protein AZC_3085; sp|Q04855|Y3085_AZOC5;evalue=3e-013; PctID=31.97; score=78.2. | Putative transcriptional regulatory protein pdtaR; Member of the two-component regulatory system pdtaR/pdtaS. (Potential). ProRule:PRU00308}. Sequence=AAK45932.1; Type=Erroneous initiation; Evidence=; sp|P9WGM2|PDTAR_MYCTO,sp|P9WGM3|PDTAR_MYCTU; evalue=1e-014; PctID=35.77; score=83.2. | 0.854 |
| MCBB_1258 | pdtaS1 | MCBB_1258 | MCBB_0068 | Putative protein AZC_3085; sp|Q04855|Y3085_AZOC5;evalue=3e-013; PctID=31.97; score=78.2. | Putative sensor histidine kinase pdtaS; Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR (By similarity). phospho-L-histidine; sp|P9WGL4|PDTAS_MYCTO,sp|P9WGL5|PDTAS_MYCTU; evalue=2e-021; PctID=33.33; score=105. | 0.945 |
| MCBB_1258 | pdtaS11 | MCBB_1258 | MCBB_1518 | Putative protein AZC_3085; sp|Q04855|Y3085_AZOC5;evalue=3e-013; PctID=31.97; score=78.2. | Putative sensor histidine kinase pdtaS; Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR (By similarity). phospho-L-histidine; sp|P9WGL4|PDTAS_MYCTO,sp|P9WGL5|PDTAS_MYCTU; evalue=1e-016; PctID=28.40; score=89.0. | 0.413 |
| MCBB_1258 | pdtaS9 | MCBB_1258 | MCBB_1261 | Putative protein AZC_3085; sp|Q04855|Y3085_AZOC5;evalue=3e-013; PctID=31.97; score=78.2. | Putative sensor histidine kinase pdtaS; Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR (By similarity). phospho-L-histidine; sp|P9WGL4|PDTAS_MYCTO,sp|P9WGL5|PDTAS_MYCTU; evalue=2e-020; PctID=32.98; score=102. | 0.407 |
| MCBB_2353 | filI | MCBB_2353 | MCBB_1712 | PAS domain S-box; tr|K6U9S1|K6U9S1_9EURY;evalue=5e-069; PctID=43.84; score=269; {ECO:0000313|EMBL:EKQ54049,1}. | Methanogenesis regulatory histidine kinase FilI; Could also catalyze the synthesis of the quorum sensing (QS) signal molecules carboxyl-acyl homoserine lactones (AHLs), which regulate the transition of the cellular morphology from short cells to filaments and of the carbon metabolic flux from biomass formation to methane production. phospho-L-histidine. Multi-pass membrane protein Transcript level increases with cell density. ProRule:PRU00102}; sp|E5KK10|FILI_METH6;evalue=6e-010; PctID=31.54; score=66.2; {ECO:0000305}. | 0.481 |
| MCBB_2353 | pdtaR3 | MCBB_2353 | MCBB_1096 | PAS domain S-box; tr|K6U9S1|K6U9S1_9EURY;evalue=5e-069; PctID=43.84; score=269; {ECO:0000313|EMBL:EKQ54049,1}. | Putative transcriptional regulatory protein pdtaR; Member of the two-component regulatory system pdtaR/pdtaS. (Potential). ProRule:PRU00308}. Sequence=AAK45932.1; Type=Erroneous initiation; Evidence=; sp|P9WGM2|PDTAR_MYCTO,sp|P9WGM3|PDTAR_MYCTU; evalue=9e-016; PctID=31.88; score=85.1. | 0.680 |
| aphA1 | MCBB_1258 | MCBB_1683 | MCBB_1258 | Cyanobacterial phytochrome A; Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. phospho-L-histidine. family; sp|Q9LCC2|PHYA_NOSS1;evalue=2e-065; PctID=52.65; score=250. | Putative protein AZC_3085; sp|Q04855|Y3085_AZOC5;evalue=3e-013; PctID=31.97; score=78.2. | 0.463 |
| aphA1 | filI | MCBB_1683 | MCBB_1712 | Cyanobacterial phytochrome A; Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. phospho-L-histidine. family; sp|Q9LCC2|PHYA_NOSS1;evalue=2e-065; PctID=52.65; score=250. | Methanogenesis regulatory histidine kinase FilI; Could also catalyze the synthesis of the quorum sensing (QS) signal molecules carboxyl-acyl homoserine lactones (AHLs), which regulate the transition of the cellular morphology from short cells to filaments and of the carbon metabolic flux from biomass formation to methane production. phospho-L-histidine. Multi-pass membrane protein Transcript level increases with cell density. ProRule:PRU00102}; sp|E5KK10|FILI_METH6;evalue=6e-010; PctID=31.54; score=66.2; {ECO:0000305}. | 0.727 |
| aphA1 | msmS | MCBB_1683 | MCBB_1296 | Cyanobacterial phytochrome A; Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. phospho-L-histidine. family; sp|Q9LCC2|PHYA_NOSS1;evalue=2e-065; PctID=52.65; score=250. | Heme-binding sensor kinase component part of a two-component regulatory system involved in methyl sulfide metabolism. Does not act as a phytochrome-like photoreceptor. phospho-L-histidine. Name=heme; Xref=ChEBI:CHEBI:30413; Evidence=; Note=Heme-binding is redox-active and coordinates various ligands such as imidazole, dimethyl sulfide, and carbon monoxide depending on the redox state. The redox state of the heme cofactor influences on autophosphorylation activity: while reduced protein does not autophosphorylate, oxidized protein promotes autophosphorylation signal; redox state of heme [...] | 0.707 |
| aphA1 | pdtaR3 | MCBB_1683 | MCBB_1096 | Cyanobacterial phytochrome A; Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. phospho-L-histidine. family; sp|Q9LCC2|PHYA_NOSS1;evalue=2e-065; PctID=52.65; score=250. | Putative transcriptional regulatory protein pdtaR; Member of the two-component regulatory system pdtaR/pdtaS. (Potential). ProRule:PRU00308}. Sequence=AAK45932.1; Type=Erroneous initiation; Evidence=; sp|P9WGM2|PDTAR_MYCTO,sp|P9WGM3|PDTAR_MYCTU; evalue=9e-016; PctID=31.88; score=85.1. | 0.673 |
| aphA1 | pdtaS5 | MCBB_1683 | MCBB_0649 | Cyanobacterial phytochrome A; Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. phospho-L-histidine. family; sp|Q9LCC2|PHYA_NOSS1;evalue=2e-065; PctID=52.65; score=250. | Putative sensor histidine kinase pdtaS; Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR (By similarity). phospho-L-histidine; sp|P9WGL4|PDTAS_MYCTO,sp|P9WGL5|PDTAS_MYCTU; evalue=4e-017; PctID=31.94; score=91.3. | 0.466 |
| filI | MCBB_2353 | MCBB_1712 | MCBB_2353 | Methanogenesis regulatory histidine kinase FilI; Could also catalyze the synthesis of the quorum sensing (QS) signal molecules carboxyl-acyl homoserine lactones (AHLs), which regulate the transition of the cellular morphology from short cells to filaments and of the carbon metabolic flux from biomass formation to methane production. phospho-L-histidine. Multi-pass membrane protein Transcript level increases with cell density. ProRule:PRU00102}; sp|E5KK10|FILI_METH6;evalue=6e-010; PctID=31.54; score=66.2; {ECO:0000305}. | PAS domain S-box; tr|K6U9S1|K6U9S1_9EURY;evalue=5e-069; PctID=43.84; score=269; {ECO:0000313|EMBL:EKQ54049,1}. | 0.481 |
| filI | aphA1 | MCBB_1712 | MCBB_1683 | Methanogenesis regulatory histidine kinase FilI; Could also catalyze the synthesis of the quorum sensing (QS) signal molecules carboxyl-acyl homoserine lactones (AHLs), which regulate the transition of the cellular morphology from short cells to filaments and of the carbon metabolic flux from biomass formation to methane production. phospho-L-histidine. Multi-pass membrane protein Transcript level increases with cell density. ProRule:PRU00102}; sp|E5KK10|FILI_METH6;evalue=6e-010; PctID=31.54; score=66.2; {ECO:0000305}. | Cyanobacterial phytochrome A; Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. phospho-L-histidine. family; sp|Q9LCC2|PHYA_NOSS1;evalue=2e-065; PctID=52.65; score=250. | 0.727 |
| msmS | MCBB_1258 | MCBB_1296 | MCBB_1258 | Heme-binding sensor kinase component part of a two-component regulatory system involved in methyl sulfide metabolism. Does not act as a phytochrome-like photoreceptor. phospho-L-histidine. Name=heme; Xref=ChEBI:CHEBI:30413; Evidence=; Note=Heme-binding is redox-active and coordinates various ligands such as imidazole, dimethyl sulfide, and carbon monoxide depending on the redox state. The redox state of the heme cofactor influences on autophosphorylation activity: while reduced protein does not autophosphorylate, oxidized protein promotes autophosphorylation signal; redox state of heme [...] | Putative protein AZC_3085; sp|Q04855|Y3085_AZOC5;evalue=3e-013; PctID=31.97; score=78.2. | 0.947 |
| msmS | aphA1 | MCBB_1296 | MCBB_1683 | Heme-binding sensor kinase component part of a two-component regulatory system involved in methyl sulfide metabolism. Does not act as a phytochrome-like photoreceptor. phospho-L-histidine. Name=heme; Xref=ChEBI:CHEBI:30413; Evidence=; Note=Heme-binding is redox-active and coordinates various ligands such as imidazole, dimethyl sulfide, and carbon monoxide depending on the redox state. The redox state of the heme cofactor influences on autophosphorylation activity: while reduced protein does not autophosphorylate, oxidized protein promotes autophosphorylation signal; redox state of heme [...] | Cyanobacterial phytochrome A; Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. phospho-L-histidine. family; sp|Q9LCC2|PHYA_NOSS1;evalue=2e-065; PctID=52.65; score=250. | 0.707 |
| msmS | pdtaR3 | MCBB_1296 | MCBB_1096 | Heme-binding sensor kinase component part of a two-component regulatory system involved in methyl sulfide metabolism. Does not act as a phytochrome-like photoreceptor. phospho-L-histidine. Name=heme; Xref=ChEBI:CHEBI:30413; Evidence=; Note=Heme-binding is redox-active and coordinates various ligands such as imidazole, dimethyl sulfide, and carbon monoxide depending on the redox state. The redox state of the heme cofactor influences on autophosphorylation activity: while reduced protein does not autophosphorylate, oxidized protein promotes autophosphorylation signal; redox state of heme [...] | Putative transcriptional regulatory protein pdtaR; Member of the two-component regulatory system pdtaR/pdtaS. (Potential). ProRule:PRU00308}. Sequence=AAK45932.1; Type=Erroneous initiation; Evidence=; sp|P9WGM2|PDTAR_MYCTO,sp|P9WGM3|PDTAR_MYCTU; evalue=9e-016; PctID=31.88; score=85.1. | 0.947 |
| msmS | pdtaR7 | MCBB_1296 | MCBB_2021 | Heme-binding sensor kinase component part of a two-component regulatory system involved in methyl sulfide metabolism. Does not act as a phytochrome-like photoreceptor. phospho-L-histidine. Name=heme; Xref=ChEBI:CHEBI:30413; Evidence=; Note=Heme-binding is redox-active and coordinates various ligands such as imidazole, dimethyl sulfide, and carbon monoxide depending on the redox state. The redox state of the heme cofactor influences on autophosphorylation activity: while reduced protein does not autophosphorylate, oxidized protein promotes autophosphorylation signal; redox state of heme [...] | Putative transcriptional regulatory protein pdtaR; Member of the two-component regulatory system pdtaR/pdtaS. (Potential). ProRule:PRU00308}. Sequence=AAK45932.1; Type=Erroneous initiation; Evidence=; sp|P9WGM2|PDTAR_MYCTO,sp|P9WGM3|PDTAR_MYCTU; evalue=1e-014; PctID=35.77; score=83.2. | 0.955 |
| msmS | pdtaS1 | MCBB_1296 | MCBB_0068 | Heme-binding sensor kinase component part of a two-component regulatory system involved in methyl sulfide metabolism. Does not act as a phytochrome-like photoreceptor. phospho-L-histidine. Name=heme; Xref=ChEBI:CHEBI:30413; Evidence=; Note=Heme-binding is redox-active and coordinates various ligands such as imidazole, dimethyl sulfide, and carbon monoxide depending on the redox state. The redox state of the heme cofactor influences on autophosphorylation activity: while reduced protein does not autophosphorylate, oxidized protein promotes autophosphorylation signal; redox state of heme [...] | Putative sensor histidine kinase pdtaS; Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR (By similarity). phospho-L-histidine; sp|P9WGL4|PDTAS_MYCTO,sp|P9WGL5|PDTAS_MYCTU; evalue=2e-021; PctID=33.33; score=105. | 0.409 |
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