(27 nodes) PKMTs methylate histone lysines, and Nucleosome network (Capronia coronata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O1_08808	WD_REPEATS_REGION domain-containing protein. (550 aa)
	A1O1_08633	Histone H3-like centromeric protein A. (153 aa)
	A1O1_06690	Uncharacterized protein. (817 aa)
	A1O1_04597	PHD-type domain-containing protein. (565 aa)
	A1O1_05870	SET domain-containing protein. (513 aa)
	A1O1_04252	Histone-lysine N-methyltransferase ASH1L. (779 aa)
	A1O1_04418	Uncharacterized protein. (1411 aa)
	A1O1_05171	Histone-lysine N-methyltransferase SETD2; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily. (1023 aa)
	A1O1_05181	BAH domain-containing protein. (451 aa)
	A1O1_01814	Uncharacterized protein. (185 aa)
	A1O1_02039	Uncharacterized protein. (930 aa)
	A1O1_01725	Chromo domain-containing protein. (872 aa)
	A1O1_02285	SET domain-containing protein. (253 aa)
	A1O1_02290	Uncharacterized protein. (218 aa)
	A1O1_07333	Uncharacterized protein. (199 aa)
	A1O1_02516	SET domain-containing protein. (443 aa)
	A1O1_02586	Histone-lysine N-methyltransferase, H3 lysine-79 specific; Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones. (539 aa)
	A1O1_02641	Uncharacterized protein. (537 aa)
	A1O1_04463	SET domain-containing protein. (773 aa)
	A1O1_00131	DUF2236 domain-containing protein. (466 aa)
	A1O1_00917	Uncharacterized protein. (1463 aa)
	A1O1_01782	Histone H2A; Belongs to the histone H2A family. (139 aa)
	A1O1_02023	Uncharacterized protein. (1511 aa)
	A1O1_00617	Chromo domain-containing protein. (237 aa)
	A1O1_00777	Uncharacterized protein. (669 aa)
	A1O1_04126	Post-SET domain-containing protein. (202 aa)
	A1O1_04216	Uncharacterized protein. (699 aa)

Your Current Organism:

Capronia coronata

NCBI taxonomy Id: 1182541
Other names: C. coronata CBS 617.96, Capronia coronata CBS 617.96

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O1_00131	A1O1_00617	W9YR40	W9Z0N7	DUF2236 domain-containing protein.	Chromo domain-containing protein.	0.815
A1O1_00131	A1O1_00777	W9YR40	W9Z123	DUF2236 domain-containing protein.	Uncharacterized protein.	0.604
A1O1_00131	A1O1_00917	W9YR40	W9YTB9	DUF2236 domain-containing protein.	Uncharacterized protein.	0.828
A1O1_00131	A1O1_01725	W9YR40	W9YLC4	DUF2236 domain-containing protein.	Chromo domain-containing protein.	0.815
A1O1_00131	A1O1_01782	W9YR40	W9YUQ1	DUF2236 domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.934
A1O1_00131	A1O1_01814	W9YR40	W9YKL5	DUF2236 domain-containing protein.	Uncharacterized protein.	0.674
A1O1_00131	A1O1_02023	W9YR40	W9YWH3	DUF2236 domain-containing protein.	Uncharacterized protein.	0.941
A1O1_00131	A1O1_02039	W9YR40	W9YL60	DUF2236 domain-containing protein.	Uncharacterized protein.	0.674
A1O1_00131	A1O1_02285	W9YR40	W9YLY6	DUF2236 domain-containing protein.	SET domain-containing protein.	0.728
A1O1_00131	A1O1_02290	W9YR40	W9YLY9	DUF2236 domain-containing protein.	Uncharacterized protein.	0.728
A1O1_00131	A1O1_02516	W9YR40	W9YNJ1	DUF2236 domain-containing protein.	SET domain-containing protein.	0.604
A1O1_00131	A1O1_02586	W9YR40	W9YNQ3	DUF2236 domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific; Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.	0.880
A1O1_00131	A1O1_02641	W9YR40	W9YNV7	DUF2236 domain-containing protein.	Uncharacterized protein.	0.728
A1O1_00131	A1O1_04126	W9YR40	W9Z936	DUF2236 domain-containing protein.	Post-SET domain-containing protein.	0.745
A1O1_00131	A1O1_04216	W9YR40	W9Z9C0	DUF2236 domain-containing protein.	Uncharacterized protein.	0.728
A1O1_00131	A1O1_04252	W9YR40	W9YF11	DUF2236 domain-containing protein.	Histone-lysine N-methyltransferase ASH1L.	0.745
A1O1_00131	A1O1_04418	W9YR40	W9YFI6	DUF2236 domain-containing protein.	Uncharacterized protein.	0.832
A1O1_00131	A1O1_04597	W9YR40	W9Y569	DUF2236 domain-containing protein.	PHD-type domain-containing protein.	0.651
A1O1_00131	A1O1_05171	W9YR40	W9YG47	DUF2236 domain-containing protein.	Histone-lysine N-methyltransferase SETD2; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.	0.923
A1O1_00131	A1O1_05181	W9YR40	W9YG56	DUF2236 domain-containing protein.	BAH domain-containing protein.	0.990