(9 nodes) Extrinsic component of plasma membrane network (Capronia coronata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O1_07730	G protein beta subunit-like protein. (398 aa)
	A1O1_06833	Guanine nucleotide-binding protein subunit alpha. (353 aa)
	A1O1_01734	Uncharacterized protein. (290 aa)
	A1O1_05097	Guanine nucleotide-binding protein subunit gamma. (93 aa)
	A1O1_02589	Guanine nucleotide-binding protein subunit beta. (353 aa)
	A1O1_02139	Uncharacterized protein. (358 aa)
	A1O1_00257	Guanine nucleotide-binding protein alpha-3 subunit. (357 aa)
	A1O1_08404	GTP-binding protein rhb1. (188 aa)
	A1O1_08403	WAPL domain-containing protein. (911 aa)

Your Current Organism:

Capronia coronata

NCBI taxonomy Id: 1182541
Other names: C. coronata CBS 617.96, Capronia coronata CBS 617.96

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O1_00257	A1O1_02139	W9YRE9	W9YWT3	Guanine nucleotide-binding protein alpha-3 subunit.	Uncharacterized protein.	0.721
A1O1_00257	A1O1_02589	W9YRE9	W9YY37	Guanine nucleotide-binding protein alpha-3 subunit.	Guanine nucleotide-binding protein subunit beta.	0.975
A1O1_00257	A1O1_05097	W9YRE9	W9Z0W3	Guanine nucleotide-binding protein alpha-3 subunit.	Guanine nucleotide-binding protein subunit gamma.	0.807
A1O1_00257	A1O1_06833	W9YRE9	W9YLR5	Guanine nucleotide-binding protein alpha-3 subunit.	Guanine nucleotide-binding protein subunit alpha.	0.850
A1O1_00257	A1O1_08403	W9YRE9	W9XTE2	Guanine nucleotide-binding protein alpha-3 subunit.	WAPL domain-containing protein.	0.588
A1O1_00257	A1O1_08404	W9YRE9	W9XIC1	Guanine nucleotide-binding protein alpha-3 subunit.	GTP-binding protein rhb1.	0.588
A1O1_01734	A1O1_02589	W9YKE9	W9YY37	Uncharacterized protein.	Guanine nucleotide-binding protein subunit beta.	0.944
A1O1_01734	A1O1_05097	W9YKE9	W9Z0W3	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma.	0.726
A1O1_01734	A1O1_08403	W9YKE9	W9XTE2	Uncharacterized protein.	WAPL domain-containing protein.	0.562
A1O1_01734	A1O1_08404	W9YKE9	W9XIC1	Uncharacterized protein.	GTP-binding protein rhb1.	0.562
A1O1_02139	A1O1_00257	W9YWT3	W9YRE9	Uncharacterized protein.	Guanine nucleotide-binding protein alpha-3 subunit.	0.721
A1O1_02139	A1O1_02589	W9YWT3	W9YY37	Uncharacterized protein.	Guanine nucleotide-binding protein subunit beta.	0.965
A1O1_02139	A1O1_05097	W9YWT3	W9Z0W3	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma.	0.807
A1O1_02139	A1O1_06833	W9YWT3	W9YLR5	Uncharacterized protein.	Guanine nucleotide-binding protein subunit alpha.	0.720
A1O1_02139	A1O1_08403	W9YWT3	W9XTE2	Uncharacterized protein.	WAPL domain-containing protein.	0.588
A1O1_02139	A1O1_08404	W9YWT3	W9XIC1	Uncharacterized protein.	GTP-binding protein rhb1.	0.588
A1O1_02589	A1O1_00257	W9YY37	W9YRE9	Guanine nucleotide-binding protein subunit beta.	Guanine nucleotide-binding protein alpha-3 subunit.	0.975
A1O1_02589	A1O1_01734	W9YY37	W9YKE9	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.944
A1O1_02589	A1O1_02139	W9YY37	W9YWT3	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein.	0.965
A1O1_02589	A1O1_05097	W9YY37	W9Z0W3	Guanine nucleotide-binding protein subunit beta.	Guanine nucleotide-binding protein subunit gamma.	0.990