(38 nodes) Ribosome assembly network (Capronia coronata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O1_01139	WD_REPEATS_REGION domain-containing protein. (525 aa)
	A1O1_09164	Uncharacterized protein. (1812 aa)
	A1O1_09247	Elongation factor 2. (1088 aa)
	A1O1_07060	Uncharacterized protein. (371 aa)
	A1O1_07510	Uncharacterized protein. (463 aa)
	A1O1_07650	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (314 aa)
	A1O1_06693	60S ribosomal protein L5. (301 aa)
	A1O1_07473	CP-type G domain-containing protein. (697 aa)
	A1O1_05740	Uncharacterized protein. (802 aa)
	A1O1_09241	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (248 aa)
	A1O1_04777	Brix domain-containing protein. (445 aa)
	A1O1_04367	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (248 aa)
	A1O1_05099	Uncharacterized protein. (413 aa)
	A1O1_05201	Valyl-tRNA synthetase. (386 aa)
	A1O1_06903	Uncharacterized protein. (298 aa)
	A1O1_03869	Translation initiation factor 5. (428 aa)
	A1O1_02390	WD_REPEATS_REGION domain-containing protein. (888 aa)
	A1O1_02756	Small subunit ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (81 aa)
	A1O1_02848	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (430 aa)
	A1O1_07456	Large subunit ribosomal protein L23Ae. (154 aa)
	A1O1_04228	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)
	A1O1_03196	Uncharacterized protein. (311 aa)
	A1O1_00222	Uncharacterized protein. (769 aa)
	A1O1_00489	60S ribosomal protein L10-A. (223 aa)
	A1O1_00504	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4851 aa)
	A1O1_06268	Uncharacterized protein. (262 aa)
	A1O1_01727	Uncharacterized protein. (347 aa)
	A1O1_01369	40S ribosomal protein S28. (63 aa)
	A1O1_01728	Brix domain-containing protein. (336 aa)
	A1O1_02831	Exonuclease domain-containing protein. (310 aa)
	A1O1_00079	Ribosomal_S7 domain-containing protein. (364 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (292 aa)
	A1O1_05102	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	A1O1_00356	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (188 aa)
	A1O1_03490	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (215 aa)
	A1O1_03061	40S ribosomal protein S19. (142 aa)
	A1O1_03267	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (293 aa)

Your Current Organism:

Capronia coronata

NCBI taxonomy Id: 1182541
Other names: C. coronata CBS 617.96, Capronia coronata CBS 617.96

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O1_00079	A1O1_00489	W9Z078	W9YS77	Ribosomal_S7 domain-containing protein.	60S ribosomal protein L10-A.	0.988
A1O1_00079	A1O1_01369	W9Z078	W9YUP4	Ribosomal_S7 domain-containing protein.	40S ribosomal protein S28.	0.971
A1O1_00079	A1O1_02390	W9Z078	W9YM64	Ribosomal_S7 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.943
A1O1_00079	A1O1_02756	W9Z078	W9YN94	Ribosomal_S7 domain-containing protein.	Small subunit ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.962
A1O1_00079	A1O1_03061	W9Z078	W9ZJH7	Ribosomal_S7 domain-containing protein.	40S ribosomal protein S19.	0.996
A1O1_00079	A1O1_03267	W9Z078	W9ZK58	Ribosomal_S7 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.983
A1O1_00079	A1O1_03869	W9Z078	W9YM56	Ribosomal_S7 domain-containing protein.	Translation initiation factor 5.	0.950
A1O1_00079	A1O1_04228	W9Z078	W9YPF0	Ribosomal_S7 domain-containing protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.987
A1O1_00079	A1O1_04367	W9Z078	W9YEF2	Ribosomal_S7 domain-containing protein.	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.	0.995
A1O1_00079	A1O1_05102	W9Z078	W9Z0W7	Ribosomal_S7 domain-containing protein.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.996
A1O1_00079	A1O1_06268	W9Z078	W9YUF0	Ribosomal_S7 domain-containing protein.	Uncharacterized protein.	0.995
A1O1_00079	A1O1_06693	W9Z078	W9Y0B4	Ribosomal_S7 domain-containing protein.	60S ribosomal protein L5.	0.991
A1O1_00079	A1O1_06903	W9Z078	W9YLZ5	Ribosomal_S7 domain-containing protein.	Uncharacterized protein.	0.946
A1O1_00079	A1O1_07060	W9Z078	W9XSC0	Ribosomal_S7 domain-containing protein.	Uncharacterized protein.	0.638
A1O1_00079	A1O1_07456	W9Z078	W9YNM0	Ribosomal_S7 domain-containing protein.	Large subunit ribosomal protein L23Ae.	0.991
A1O1_00079	A1O1_07650	W9Z078	W9XX76	Ribosomal_S7 domain-containing protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.988
A1O1_00079	A1O1_09164	W9Z078	W9XE73	Ribosomal_S7 domain-containing protein.	Uncharacterized protein.	0.995
A1O1_00079	A1O1_09241	W9Z078	W9Y904	Ribosomal_S7 domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.964
A1O1_00079	A1O1_09247	W9Z078	W9XNG8	Ribosomal_S7 domain-containing protein.	Elongation factor 2.	0.866
A1O1_00079	RPS0	W9Z078	W9Z0C8	Ribosomal_S7 domain-containing protein.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.995