(11 nodes) Ribosomal protein L2, domain 2 network (Capronia coronata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O1_00060	Large subunit ribosomal protein L14e. (152 aa)
	A1O1_05853	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
	A1O1_01089	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1096 aa)
	A1O1_02413	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1413 aa)
	A1O1_08172	Ribosomal_L2_C domain-containing protein. (404 aa)
	A1O1_07736	Uncharacterized protein. (379 aa)
	A1O1_08559	60S ribosomal protein L2. (254 aa)
	A1O1_03923	Eukaryotic translation initiation factor 5A. (162 aa)
	A1O1_02696	50S ribosomal protein L24. (132 aa)
	A1O1_04167	eIF-5a domain-containing protein. (415 aa)
	A1O1_04228	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (202 aa)

Your Current Organism:

Capronia coronata

NCBI taxonomy Id: 1182541
Other names: C. coronata CBS 617.96, Capronia coronata CBS 617.96

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O1_00060	A1O1_02413	W9YPV9	W9YWG8	Large subunit ribosomal protein L14e.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.578
A1O1_00060	A1O1_02696	W9YPV9	W9YN03	Large subunit ribosomal protein L14e.	50S ribosomal protein L24.	0.999
A1O1_00060	A1O1_03923	W9YPV9	W9YE60	Large subunit ribosomal protein L14e.	Eukaryotic translation initiation factor 5A.	0.988
A1O1_00060	A1O1_04167	W9YPV9	W9YN04	Large subunit ribosomal protein L14e.	eIF-5a domain-containing protein.	0.972
A1O1_00060	A1O1_04228	W9YPV9	W9YPF0	Large subunit ribosomal protein L14e.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
A1O1_00060	A1O1_05853	W9YPV9	W9YT81	Large subunit ribosomal protein L14e.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
A1O1_00060	A1O1_08172	W9YPV9	W9XPF5	Large subunit ribosomal protein L14e.	Ribosomal_L2_C domain-containing protein.	0.958
A1O1_00060	A1O1_08559	W9YPV9	W9YDN3	Large subunit ribosomal protein L14e.	60S ribosomal protein L2.	0.999
A1O1_02413	A1O1_00060	W9YWG8	W9YPV9	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	Large subunit ribosomal protein L14e.	0.578
A1O1_02413	A1O1_02696	W9YWG8	W9YN03	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	50S ribosomal protein L24.	0.579
A1O1_02413	A1O1_04228	W9YWG8	W9YPF0	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.569
A1O1_02413	A1O1_05853	W9YWG8	W9YT81	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.579
A1O1_02413	A1O1_08172	W9YWG8	W9XPF5	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	Ribosomal_L2_C domain-containing protein.	0.434
A1O1_02413	A1O1_08559	W9YWG8	W9YDN3	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	60S ribosomal protein L2.	0.579
A1O1_02696	A1O1_00060	W9YN03	W9YPV9	50S ribosomal protein L24.	Large subunit ribosomal protein L14e.	0.999
A1O1_02696	A1O1_02413	W9YN03	W9YWG8	50S ribosomal protein L24.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.579
A1O1_02696	A1O1_03923	W9YN03	W9YE60	50S ribosomal protein L24.	Eukaryotic translation initiation factor 5A.	0.973
A1O1_02696	A1O1_04167	W9YN03	W9YN04	50S ribosomal protein L24.	eIF-5a domain-containing protein.	0.965
A1O1_02696	A1O1_04228	W9YN03	W9YPF0	50S ribosomal protein L24.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
A1O1_02696	A1O1_05853	W9YN03	W9YT81	50S ribosomal protein L24.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999