15 items (Capronia coronata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O1_03780	WD_REPEATS_REGION domain-containing protein. (294 aa)
	A1O1_03926	Uncharacterized protein. (667 aa)
	A1O1_04078	Uncharacterized protein. (432 aa)
	A1O1_01393	CMGC/CDK/CDK8 protein kinase. (470 aa)
	A1O1_06448	BZIP domain-containing protein. (266 aa)
	A1O1_01903	Pre-mRNA-processing protein 45. (584 aa)
	A1O1_02293	STIP1 likey and U-box containing protein 1. (285 aa)
	A1O1_03914	Homeobox domain-containing protein. (291 aa)
	A1O1_03113	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	A1O1_00581	Homeobox domain-containing protein. (305 aa)
	A1O1_07079	CBFD_NFYB_HMF domain-containing protein. (179 aa)
	A1O1_04664	Uncharacterized protein. (865 aa)
	A1O1_03570	Uncharacterized protein. (551 aa)
	A1O1_05346	Kexin. (853 aa)
	A1O1_09157	CYCLIN domain-containing protein; Belongs to the cyclin family. (353 aa)

Your Current Organism:

Capronia coronata

NCBI taxonomy Id: 1182541
Other names: C. coronata CBS 617.96, Capronia coronata CBS 617.96

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O1_00581	A1O1_04664	W9ZLU6	W9Y5D1	Homeobox domain-containing protein.	Uncharacterized protein.	0.459
A1O1_01393	A1O1_03926	W9YTM9	W9YNK9	CMGC/CDK/CDK8 protein kinase.	Uncharacterized protein.	0.739
A1O1_01393	A1O1_09157	W9YTM9	W9XN44	CMGC/CDK/CDK8 protein kinase.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.999
A1O1_01903	A1O1_04078	W9YW64	W9YP18	Pre-mRNA-processing protein 45.	Uncharacterized protein.	0.758
A1O1_02293	A1O1_03113	W9YW69	W9YZI8	STIP1 likey and U-box containing protein 1.	Ubiquitin-40S ribosomal protein S27a.	0.729
A1O1_02293	A1O1_06448	W9YW69	W9YUX2	STIP1 likey and U-box containing protein 1.	BZIP domain-containing protein.	0.729
A1O1_03113	A1O1_02293	W9YZI8	W9YW69	Ubiquitin-40S ribosomal protein S27a.	STIP1 likey and U-box containing protein 1.	0.729
A1O1_03113	A1O1_04078	W9YZI8	W9YP18	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.584
A1O1_03113	A1O1_05346	W9YZI8	W9YGP0	Ubiquitin-40S ribosomal protein S27a.	Kexin.	0.627
A1O1_03914	A1O1_04664	W9Z8G1	W9Y5D1	Homeobox domain-containing protein.	Uncharacterized protein.	0.459
A1O1_03926	A1O1_01393	W9YNK9	W9YTM9	Uncharacterized protein.	CMGC/CDK/CDK8 protein kinase.	0.739
A1O1_03926	A1O1_09157	W9YNK9	W9XN44	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.708
A1O1_04078	A1O1_01903	W9YP18	W9YW64	Uncharacterized protein.	Pre-mRNA-processing protein 45.	0.758
A1O1_04078	A1O1_03113	W9YP18	W9YZI8	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.584
A1O1_04078	A1O1_06448	W9YP18	W9YUX2	Uncharacterized protein.	BZIP domain-containing protein.	0.584
A1O1_04664	A1O1_00581	W9Y5D1	W9ZLU6	Uncharacterized protein.	Homeobox domain-containing protein.	0.459
A1O1_04664	A1O1_03914	W9Y5D1	W9Z8G1	Uncharacterized protein.	Homeobox domain-containing protein.	0.459
A1O1_05346	A1O1_03113	W9YGP0	W9YZI8	Kexin.	Ubiquitin-40S ribosomal protein S27a.	0.627
A1O1_05346	A1O1_06448	W9YGP0	W9YUX2	Kexin.	BZIP domain-containing protein.	0.627
A1O1_06448	A1O1_02293	W9YUX2	W9YW69	BZIP domain-containing protein.	STIP1 likey and U-box containing protein 1.	0.729