10 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O3_08088	DNA polymerase eta subunit. (650 aa)
	A1O3_10168	Replication factor C subunit 5. (354 aa)
	A1O3_06196	Vezatin domain-containing protein. (588 aa)
	A1O3_06206	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (228 aa)
	A1O3_07989	Replication factor C subunit 4. (352 aa)
	A1O3_10397	Replication factor C subunit 1. (1083 aa)
	A1O3_05494	AAA domain-containing protein. (963 aa)
	A1O3_02819	Uncharacterized protein. (512 aa)
	A1O3_00786	Replication factor C subunit 3/5. (408 aa)
	A1O3_04027	AAA domain-containing protein. (397 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_00786	A1O3_02819	W9YSJ0	W9YA69	Replication factor C subunit 3/5.	Uncharacterized protein.	0.992
A1O3_00786	A1O3_04027	W9YSJ0	W9YXP7	Replication factor C subunit 3/5.	AAA domain-containing protein.	0.999
A1O3_00786	A1O3_05494	W9YSJ0	W9Y6H6	Replication factor C subunit 3/5.	AAA domain-containing protein.	0.988
A1O3_00786	A1O3_06196	W9YSJ0	W9XQB4	Replication factor C subunit 3/5.	Vezatin domain-containing protein.	0.975
A1O3_00786	A1O3_06206	W9YSJ0	W9XQC4	Replication factor C subunit 3/5.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.975
A1O3_00786	A1O3_07989	W9YSJ0	W9XRT7	Replication factor C subunit 3/5.	Replication factor C subunit 4.	0.999
A1O3_00786	A1O3_08088	W9YSJ0	W9XHU6	Replication factor C subunit 3/5.	DNA polymerase eta subunit.	0.992
A1O3_00786	A1O3_10168	W9YSJ0	W9XJ62	Replication factor C subunit 3/5.	Replication factor C subunit 5.	0.999
A1O3_00786	A1O3_10397	W9YSJ0	W9Y445	Replication factor C subunit 3/5.	Replication factor C subunit 1.	0.999
A1O3_02819	A1O3_00786	W9YA69	W9YSJ0	Uncharacterized protein.	Replication factor C subunit 3/5.	0.992
A1O3_02819	A1O3_04027	W9YA69	W9YXP7	Uncharacterized protein.	AAA domain-containing protein.	0.995
A1O3_02819	A1O3_05494	W9YA69	W9Y6H6	Uncharacterized protein.	AAA domain-containing protein.	0.910
A1O3_02819	A1O3_06196	W9YA69	W9XQB4	Uncharacterized protein.	Vezatin domain-containing protein.	0.998
A1O3_02819	A1O3_06206	W9YA69	W9XQC4	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.998
A1O3_02819	A1O3_07989	W9YA69	W9XRT7	Uncharacterized protein.	Replication factor C subunit 4.	0.992
A1O3_02819	A1O3_08088	W9YA69	W9XHU6	Uncharacterized protein.	DNA polymerase eta subunit.	0.699
A1O3_02819	A1O3_10168	W9YA69	W9XJ62	Uncharacterized protein.	Replication factor C subunit 5.	0.994
A1O3_02819	A1O3_10397	W9YA69	W9Y445	Uncharacterized protein.	Replication factor C subunit 1.	0.910
A1O3_04027	A1O3_00786	W9YXP7	W9YSJ0	AAA domain-containing protein.	Replication factor C subunit 3/5.	0.999
A1O3_04027	A1O3_02819	W9YXP7	W9YA69	AAA domain-containing protein.	Uncharacterized protein.	0.995